Homologs of HMPREF1078_RS13360 from Parabacteroides merdae CL09T00C40

RNA polymerase sigma-70 factor
SEED: RNA polymerase ECF-type sigma factor

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13360 RNA polymerase sigma-70 factor insig. 100 100
o Phocaeicola dorei CL03T12C01 ABI39_RS00860 RNA polymerase sigma-70 factor insig. 56 96
o Bacteroides ovatus ATCC 8483 BACOVA_03594 RNA polymerase sigma-70 factor insig. 55 95
  Phocaeicola dorei CL03T12C01 ABI39_RS18115 RNA polymerase sigma-70 factor insig. 52 95
  Bacteroides ovatus ATCC 8483 BACOVA_05174 RNA polymerase sigma-70 factor insig. 54 89
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS13420 RNA polymerase sigma-70 factor insig. 50 98
  Phocaeicola dorei CL03T12C01 ABI39_RS08655 RNA polymerase sigma-70 factor insig. 51 96
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04080 RNA polymerase sigma-70 factor insig. 48 95
o Bacteroides thetaiotaomicron VPI-5482 BT4355 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 51 87
  Bacteroides ovatus ATCC 8483 BACOVA_04092 RNA polymerase sigma-70 factor insig. 47 97
  Bacteroides thetaiotaomicron VPI-5482 BT1053 RNA polymerase ECF-type sigma factor (NCBI ptt file) no data 45 95
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10785 RNA polymerase sigma-70 factor insig. 36 94
  Phocaeicola dorei CL03T12C01 ABI39_RS06310 RNA polymerase sigma-70 factor cofit 36 94
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS03570 RNA polymerase sigma-70 factor insig. 36 89
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS17460 RNA polymerase sigma-70 factor insig. 36 95
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11705 hypothetical protein insig. 33 90
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11515 RNA polymerase sigma-70 factor insig. 37 95
  Phocaeicola dorei CL03T12C01 ABI39_RS01635 RNA polymerase sigma-70 factor insig. 36 92
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3527 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 37 89
  Bacteroides ovatus ATCC 8483 BACOVA_02944 RNA polymerase sigma-70 factor insig. 35 88
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS17775 hypothetical protein sig. 34 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15190 RNA polymerase sigma-70 factor cofit 33 89
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02390 RNA polymerase sigma-70 factor insig. 34 92
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00265 RNA polymerase sigma-70 factor insig. 37 89
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 36 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05735 RNA polymerase sigma-70 factor insig. 31 98
  Bacteroides ovatus ATCC 8483 BACOVA_03283 RNA polymerase sigma-70 factor insig. 33 97
  Bacteroides ovatus ATCC 8483 BACOVA_05556 RNA polymerase sigma-70 factor insig. 33 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05780 RNA polymerase sigma-70 factor insig. 30 86
  Bacteroides ovatus ATCC 8483 BACOVA_05457 RNA polymerase sigma-70 factor insig. 34 91
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00590 RNA polymerase sigma-70 factor insig. 32 89
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15195 RNA polymerase sigma-70 factor insig. 35 95
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04750 RNA polymerase sigma-70 factor insig. 31 85
  Bacteroides thetaiotaomicron VPI-5482 BT4705 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 34 84
  Bacteroides thetaiotaomicron VPI-5482 BT2198 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 33 88
  Phocaeicola dorei CL03T12C01 ABI39_RS10300 RNA polymerase sigma-70 factor sig. 32 94
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02700 RNA polymerase sigma-70 factor insig. 33 89
  Bacteroides thetaiotaomicron VPI-5482 BT4643 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12470 hypothetical protein insig. 34 93
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4566 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 33 91
  Phocaeicola dorei CL03T12C01 ABI39_RS08670 RNA polymerase sigma-70 factor cofit 33 85
  Bacteroides thetaiotaomicron VPI-5482 BT3993 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 32 82
  Bacteroides ovatus ATCC 8483 BACOVA_04812 RNA polymerase sigma-70 factor insig. 31 87
  Bacteroides thetaiotaomicron VPI-5482 BT1877 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 33 93
  Phocaeicola dorei CL03T12C01 ABI39_RS10155 RNA polymerase sigma-70 factor insig. 31 93
  Bacteroides stercoris CC31F HMPREF1181_RS06050 RNA polymerase sigma-70 factor insig. 31 85
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05010 RNA polymerase sigma-70 factor insig. 29 87
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12095 RNA polymerase subunit sigma-70 insig. 31 88
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02810 RNA polymerase sigma-70 factor insig. 25 88
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1926 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 31 96
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00770 RNA polymerase sigma-70 factor insig. 30 88
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06645 RNA polymerase sigma-70 factor insig. 32 91
  Phocaeicola dorei CL03T12C01 ABI39_RS09110 RNA polymerase sigma-70 factor insig. 29 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11925 RNA polymerase sigma-70 factor strong 28 88
  Bacteroides ovatus ATCC 8483 BACOVA_04866 RNA polymerase sigma-70 factor insig. 32 82
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20645 RNA polymerase subunit sigma-70 insig. 31 89
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11490 RNA polymerase sigma-70 factor insig. 27 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS05370 RNA polymerase subunit sigma-70 insig. 27 89
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15055 RNA polymerase sigma-70 factor sig. 31 74
  Bacteroides ovatus ATCC 8483 BACOVA_02951 RNA polymerase sigma-70 factor insig. 31 93
  Bacteroides stercoris CC31F HMPREF1181_RS01060 RNA polymerase sigma-70 factor insig. 28 93
  Phocaeicola dorei CL03T12C01 ABI39_RS10845 RNA polymerase sigma-70 factor insig. 31 81
  Bacteroides ovatus ATCC 8483 BACOVA_01251 RNA polymerase sigma-70 factor sig. 30 96
  Phocaeicola dorei CL03T12C01 ABI39_RS03325 RNA polymerase sigma-70 factor insig. 30 80
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05575 RNA polymerase sigma-70 factor insig. 31 90
  Bacteroides ovatus ATCC 8483 BACOVA_01977 RNA polymerase sigma-70 factor insig. 27 93
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06675 RNA polymerase sigma-70 factor insig. 29 80
  Phocaeicola dorei CL03T12C01 ABI39_RS05700 RNA polymerase sigma-70 factor insig. 29 96
  Bacteroides thetaiotaomicron VPI-5482 BT3010 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 32 91
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12920 RNA polymerase sigma-70 factor insig. 31 91
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS12340 RNA polymerase sigma-70 factor cofit 33 80
  Bacteroides ovatus ATCC 8483 BACOVA_04151 RNA polymerase sigma-70 factor insig. 31 99
  Bacteroides ovatus ATCC 8483 BACOVA_05151 RNA polymerase sigma-70 factor insig. 31 100
  Bacteroides ovatus ATCC 8483 BACOVA_00284 RNA polymerase sigma-70 factor insig. 34 93
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09005 RNA polymerase sigma-70 factor cofit 30 80
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS13700 hypothetical protein insig. 28 91
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16435 RNA polymerase sigma-70 factor strong 32 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4327 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 33 82
  Bacteroides thetaiotaomicron VPI-5482 BT4070 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 31 81
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05665 RNA polymerase sigma-70 factor insig. 33 91
  Bacteroides thetaiotaomicron VPI-5482 BT2562 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 31 69
  Phocaeicola dorei CL03T12C01 ABI39_RS12275 RNA polymerase sigma-70 factor insig. 32 87
  Bacteroides thetaiotaomicron VPI-5482 BT0188 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 31 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2168 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 31 85
  Phocaeicola dorei CL03T12C01 ABI39_RS02605 RNA polymerase sigma-70 factor insig. 26 87
  Bacteroides thetaiotaomicron VPI-5482 BT1278 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 32 75
  Bacteroides thetaiotaomicron VPI-5482 BT3748 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 28 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2852 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 strong 28 89
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12435 hypothetical protein insig. 31 90
  Bacteroides stercoris CC31F HMPREF1181_RS00820 RNA polymerase sigma-70 factor insig. 29 73
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12140 hypothetical protein insig. 30 97
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS02575 hypothetical protein insig. 33 74
  Bacteroides stercoris CC31F HMPREF1181_RS04900 RNA polymerase sigma-70 factor insig. 32 92
  Bacteroides thetaiotaomicron VPI-5482 BT0752 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 30 95
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10380 RNA polymerase subunit sigma-70 insig. 29 90
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10800 RNA polymerase sigma-70 factor insig. 35 81
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04910 RNA polymerase sigma-70 factor insig. 32 84
  Phocaeicola dorei CL03T12C01 ABI39_RS08620 RNA polymerase sigma-70 factor insig. 28 99
  Phocaeicola dorei CL03T12C01 ABI39_RS06270 RNA polymerase sigma-70 factor insig. 34 81
  Bacteroides thetaiotaomicron VPI-5482 BT2463 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 28 86