Conservation of cofitness between ECD_04085 and ECD_02395 in Escherichia coli BL21

16 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_04085 2':3'-cyclic-nucleotide 2'-phosphodiesterase 1.0 ECD_02395 cyclic-di-GMP phosphodiesterase, anaerobic 0.70 3
Escherichia coli BW25113 0.99 b4213 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (NCBI) 1.00 b2503 yfgF predicted inner membrane protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.99 ECOLIN_RS24475 2',3'-cyclic-nucleotide 2'-phosphodiesterase 0.99 ECOLIN_RS14210 cyclic-guanylate-specific phosphodiesterase PdeF low > 52
Escherichia fergusonii Becca 0.99 EFB2_04315 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase 0.99 EFB2_01395 Cyclic di-GMP phosphodiesterase PdeF low > 86
Escherichia coli ECRC62 0.99 BNILDI_07215 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase 0.99 BNILDI_12250 pdeF cyclic-guanylate-specific phosphodiesterase PdeF
Escherichia coli ECOR27 0.99 NOLOHH_04305 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase 1.00 NOLOHH_13440 pdeF cyclic-guanylate-specific phosphodiesterase PdeF low > 57
Escherichia coli ECRC101 0.99 OKFHMN_12045 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase 0.99 OKFHMN_21790 pdeF cyclic-guanylate-specific phosphodiesterase PdeF
Escherichia coli ECRC99 0.99 KEDOAH_16110 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase 0.99 KEDOAH_06430 pdeF cyclic-guanylate-specific phosphodiesterase PdeF
Escherichia coli ECRC102 0.99 NIAGMN_09895 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase 0.99 NIAGMN_19560 pdeF cyclic-guanylate-specific phosphodiesterase PdeF
Escherichia coli ECRC101 0.99 MCAODC_02560 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase 0.99 MCAODC_12320 pdeF cyclic-guanylate-specific phosphodiesterase PdeF
Escherichia coli ECRC98 0.99 JDDGAC_15685 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase 0.99 JDDGAC_25735 pdeF cyclic-guanylate-specific phosphodiesterase PdeF
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF866 '2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)' transl_table=11 0.72 GFF2165 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_3400 2',3'-cyclic-nucleotide 2'-phosphodiesterase 0.63 EX28DRAFT_0164 FOG: EAL domain low > 76
Enterobacter sp. TBS_079 0.88 MPMX20_00491 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase 0.62 MPMX20_03358 Cyclic di-GMP phosphodiesterase PdeF low > 85
Klebsiella michiganensis M5al 0.88 BWI76_RS02730 2',3'-cyclic-nucleotide 2'-phosphodiesterase 0.57 BWI76_RS21005 sensor domain-containing phosphodiesterase low > 92
Serratia liquefaciens MT49 0.81 IAI46_01740 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase 0.39 IAI46_18925 sensor domain-containing phosphodiesterase low > 86
Rahnella sp. WP5 0.79 EX31_RS08725 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase 0.43 EX31_RS22670 sensor domain-containing phosphodiesterase low > 89

Not shown: 34 genomes with orthologs for ECD_04085 only; 0 genomes with orthologs for ECD_02395 only