Conservation of cofitness between ECD_00971 and ECD_02395 in Escherichia coli BL21

16 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 1.0 ECD_02395 cyclic-di-GMP phosphodiesterase, anaerobic 0.62 2
Escherichia coli BW25113 1.00 b0967 yccW predicted methyltransferase (RefSeq) 1.00 b2503 yfgF predicted inner membrane protein (NCBI) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 ECOLIN_RS14210 cyclic-guanylate-specific phosphodiesterase PdeF — —
Escherichia coli ECOR27 0.99 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 NOLOHH_13440 pdeF cyclic-guanylate-specific phosphodiesterase PdeF low > 75
Escherichia coli ECRC99 0.98 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 KEDOAH_06430 pdeF cyclic-guanylate-specific phosphodiesterase PdeF — —
Escherichia coli ECRC62 0.98 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 BNILDI_12250 pdeF cyclic-guanylate-specific phosphodiesterase PdeF low > 75
Escherichia coli ECRC102 0.98 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 NIAGMN_19560 pdeF cyclic-guanylate-specific phosphodiesterase PdeF — —
Escherichia coli ECRC100 0.98 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 OKFHMN_21790 pdeF cyclic-guanylate-specific phosphodiesterase PdeF low > 80
Escherichia coli ECRC101 0.98 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 MCAODC_12320 pdeF cyclic-guanylate-specific phosphodiesterase PdeF low > 87
Escherichia coli ECRC98 0.98 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.99 JDDGAC_25735 pdeF cyclic-guanylate-specific phosphodiesterase PdeF low > 86
Escherichia fergusonii Becca 0.98 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 0.99 EFB2_01395 Cyclic di-GMP phosphodiesterase PdeF low > 86
Enterobacter asburiae PDN3 0.95 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.63 EX28DRAFT_0164 FOG: EAL domain low > 76
Enterobacter sp. TBS_079 0.94 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.62 MPMX20_03358 Cyclic di-GMP phosphodiesterase PdeF low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF3258 LSU m5C1962 methyltransferase RlmI 0.72 GFF2165 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) low > 78
Klebsiella michiganensis M5al 0.90 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.57 BWI76_RS21005 sensor domain-containing phosphodiesterase low > 92
Serratia liquefaciens MT49 0.85 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.39 IAI46_18925 sensor domain-containing phosphodiesterase low > 86
Rahnella sp. WP5 0.82 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.43 EX31_RS22670 sensor domain-containing phosphodiesterase low > 89

Not shown: 65 genomes with orthologs for ECD_00971 only; 0 genomes with orthologs for ECD_02395 only