Conservation of cofitness between b3708 and b1835 in Escherichia coli BW25113

20 genomes with putative orthologs of both genes

Organism	Ratio1	Gene1	Name1	Description1	Ratio2	Gene2	Name2	Description2	Cofit	Rank
Escherichia coli BW25113	1.0	b3708	tnaA	tryptophanase (VIMSS)	1.0	b1835	yebU	putative nucleolar proteins (VIMSS)	0.27	9
Escherichia coli BL21	1.00	ECD_03592		tryptophanase/L-cysteine desulfhydrase, PLP-dependent	0.99	ECD_01806		16S rRNA m(5)C1407 methyltransferase, SAM-dependent	—	—
Escherichia coli ECOR38	1.00	HEPCGN_13670	tnaA	tryptophanase	0.98	HEPCGN_04840	rsmF	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	low	> 85
Escherichia coli ECRC62	1.00	BNILDI_04415	tnaA	tryptophanase	0.98	BNILDI_15745	rsmF	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	—	—
Escherichia coli ECOR27	1.00	NOLOHH_07115	tnaA	tryptophanase	0.98	NOLOHH_16950	rsmF	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	—	—
Escherichia fergusonii Becca	1.00	EFB2_04924		Tryptophanase	0.98	EFB2_02166		Ribosomal RNA small subunit methyltransferase F	low	> 86
Escherichia coli ECRC99	1.00	KEDOAH_13185	tnaA	tryptophanase	0.97	KEDOAH_01665	rsmF	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	—	—
Escherichia coli ECRC101	1.00	MCAODC_05475	tnaA	tryptophanase	0.97	MCAODC_18965	rsmF	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	—	—
Escherichia coli ECRC102	1.00	NIAGMN_12720	tnaA	tryptophanase	0.97	NIAGMN_01620	rsmF	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	—	—
Escherichia coli ECRC98	1.00	JDDGAC_18585	tnaA	tryptophanase	0.97	JDDGAC_01015	rsmF	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	—	—
Escherichia coli ECRC101	1.00	OKFHMN_14965	tnaA	tryptophanase	0.97	OKFHMN_26440	rsmF	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	—	—
Escherichia coli Nissle 1917	1.00	ECOLIN_RS21355		tryptophanase	0.98	ECOLIN_RS10215		16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	—	—
Escherichia coli HS(pFamp)R (ATCC 700891)	1.00	OHPLBJKB_04345		Tryptophanase	0.98	OHPLBJKB_01896		Ribosomal RNA small subunit methyltransferase F	low	> 73
Vibrio cholerae E7946 ATCC 55056	0.87	CSW01_14805		tryptophanase	0.57	CSW01_07545		16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	low	> 62
Dickeya dadantii 3937	0.56	DDA3937_RS18140		tryptophanase	0.66	DDA3937_RS11990		16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	low	> 74
Dickeya dianthicola 67-19	0.55	HGI48_RS18085		tryptophanase	0.65	HGI48_RS12080		16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	low	> 71
Dickeya dianthicola ME23	0.55	DZA65_RS19235		tryptophanase	0.65	DZA65_RS12530		16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	low	> 75
Klebsiella michiganensis M5al	0.55	BWI76_RS03535		Tryptophanase (EC 4.1.99.1) (from data)	0.77	BWI76_RS18000		16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	low	> 92
Bacteroides thetaiotaomicron VPI-5482	0.40	BT1492		tyrosine phenol-lyase (NCBI ptt file)	0.19	BT2042		tRNA and rRNA cytosine-C5-methylase (NCBI ptt file)	low	> 81
Bacteroides stercoris CC31F	0.39	HMPREF1181_RS04755		tryptophanase	0.18	HMPREF1181_RS08100		rRNA cytosine-C5-methyltransferase	low	> 56
Bacteroides ovatus ATCC 8483	0.39	BACOVA_04222		Beta-eliminating lyase	0.18	BACOVA_00671		NOL1/NOP2/sun family protein	low	> 94

Not shown: 3 genomes with orthologs for b3708 only; 16 genomes with orthologs for b1835 only