Conservation of cofitness between JDDGAC_01855 and JDDGAC_17350 in Escherichia coli ECRC98
16 genomes with putative orthologs of both genes
Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
Escherichia coli ECRC98 | 1.0 | JDDGAC_01855 | ldtE | L,D-transpeptidase LdtE | 1.0 | JDDGAC_17350 | cytR | DNA-binding transcriptional regulator CytR | 0.61 | 18 |
Escherichia coli ECRC99 | 1.00 | KEDOAH_00830 | ldtE | L,D-transpeptidase LdtE | 1.00 | KEDOAH_14435 | cytR | DNA-binding transcriptional regulator CytR | — | — |
Escherichia coli ECRC101 | 1.00 | MCAODC_18130 | ldtE | L,D-transpeptidase LdtE | 1.00 | MCAODC_04225 | cytR | DNA-binding transcriptional regulator CytR | low | > 87 |
Escherichia coli ECRC102 | 1.00 | NIAGMN_00785 | ldtE | L,D-transpeptidase LdtE | 1.00 | NIAGMN_11480 | cytR | DNA-binding transcriptional regulator CytR | — | — |
Escherichia coli ECRC100 | 1.00 | OKFHMN_27280 | ldtE | L,D-transpeptidase LdtE | 1.00 | OKFHMN_13725 | cytR | DNA-binding transcriptional regulator CytR | low | > 80 |
Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS09385 | | L,D-transpeptidase LdtE | 1.00 | ECOLIN_RS22650 | | DNA-binding transcriptional regulator CytR | low | > 55 |
Escherichia fergusonii Becca | 1.00 | EFB2_02314 | | putative L,D-transpeptidase YnhG | 0.99 | EFB2_04684 | | HTH-type transcriptional repressor CytR | low | > 86 |
Escherichia coli ECRC62 | 0.99 | BNILDI_16590 | ldtE | L,D-transpeptidase LdtE | 1.00 | BNILDI_05660 | cytR | DNA-binding transcriptional regulator CytR | low | > 75 |
Escherichia coli ECOR27 | 0.99 | NOLOHH_17800 | ldtE | L,D-transpeptidase LdtE | 1.00 | NOLOHH_05870 | cytR | DNA-binding transcriptional regulator CytR | low | > 75 |
Escherichia coli HS(pFamp)R (ATCC 700891) | 0.99 | OHPLBJKB_02046 | | putative L,D-transpeptidase YnhG | 1.00 | OHPLBJKB_04117 | | HTH-type transcriptional repressor CytR | low | > 73 |
Escherichia coli BL21 | 0.99 | ECD_01647 | | murein L,D-transpeptidase | 1.00 | ECD_03819 | | Anti-activator for CytR-CRP nucleoside utilization regulon | — | — |
Escherichia coli BW25113 | 0.99 | b1678 | ynhG | hypothetical protein (NCBI) | 1.00 | b3934 | cytR | DNA-binding transcriptional dual regulator (NCBI) | low | > 76 |
Escherichia coli ECOR38 | 0.99 | HEPCGN_05665 | ldtE | L,D-transpeptidase LdtE | 1.00 | HEPCGN_12370 | cytR | DNA-binding transcriptional regulator CytR | low | > 87 |
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.86 | GFF3564 | | L,D-transpeptidase YnhG | 0.89 | GFF2316 | | Transcriptional (co)regulator CytR | low | > 78 |
Klebsiella michiganensis M5al | 0.70 | BWI76_RS16970 | | murein L,D-transpeptidase | 0.86 | BWI76_RS00765 | | DNA-binding transcriptional regulator CytR | low | > 92 |
Enterobacter asburiae PDN3 | 0.67 | EX28DRAFT_1681 | | Uncharacterized protein conserved in bacteria | 0.87 | EX28DRAFT_4407 | | Transcriptional regulators | low | > 76 |
Enterobacter sp. TBS_079 | 0.66 | MPMX20_01949 | | putative L,D-transpeptidase YnhG | 0.88 | MPMX20_04535 | | HTH-type transcriptional repressor CytR | low | > 85 |
Not shown: 1 genomes with orthologs for JDDGAC_01855 only; 44 genomes with orthologs for JDDGAC_17350 only