Conservation of cofitness between CSW01_06405 and CSW01_01440 in Vibrio cholerae E7946 ATCC 55056
16 genomes with putative orthologs of both genes
Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_06405 | | murein L,D-transpeptidase | 1.0 | CSW01_01440 | | lysine:cadaverine antiporter | 0.46 | 14 |
Pectobacterium carotovorum WPP14 | 0.25 | HER17_RS12045 | | L,D-transpeptidase | 0.06 | HER17_RS01200 | | amino acid permease | low | > 75 |
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.25 | GFF3682 | | L,D-transpeptidase YcbB | 0.69 | GFF2451 | | Lysine/cadaverine antiporter membrane protein CadB | low | > 78 |
Klebsiella michiganensis M5al | 0.25 | BWI76_RS09850 | | L,D-transpeptidase | 0.69 | BWI76_RS07190 | | lysine/cadaverine antiporter | low | > 92 |
Escherichia coli ECOR27 | 0.25 | NOLOHH_21960 | ldtD | L,D-transpeptidase | 0.67 | NOLOHH_04735 | cadB | cadaverine/lysine antiporter | low | > 75 |
Escherichia coli Nissle 1917 | 0.24 | ECOLIN_RS04895 | | L,D-transpeptidase | 0.67 | ECOLIN_RS23910 | | cadaverine/lysine antiporter | low | > 55 |
Escherichia coli HS(pFamp)R (ATCC 700891) | 0.24 | OHPLBJKB_02742 | | hypothetical protein | 0.67 | OHPLBJKB_03911 | | putative cadaverine/lysine antiporter | low | > 73 |
Escherichia fergusonii Becca | 0.24 | EFB2_03139 | | putative L,D-transpeptidase YcbB | 0.67 | EFB2_04450 | | putative cadaverine/lysine antiporter | low | > 86 |
Escherichia coli BW25113 | 0.24 | b0925 | ycbB | predicted carboxypeptidase (NCBI) | 0.67 | b4132 | cadB | predicted lysine/cadaverine transporter (NCBI) | low | > 76 |
Escherichia coli ECRC62 | 0.24 | BNILDI_20215 | ldtD | L,D-transpeptidase | 0.67 | BNILDI_06755 | cadB | cadaverine/lysine antiporter | low | > 75 |
Escherichia coli BL21 | 0.24 | ECD_00929 | | murein L,D-transpeptidase | 0.67 | ECD_04003 | | putative lysine/cadaverine transporter | low | > 61 |
Escherichia coli ECRC102 | 0.24 | NIAGMN_03120 | ldtD | L,D-transpeptidase | 0.67 | NIAGMN_10315 | cadB | cadaverine/lysine antiporter | — | — |
Escherichia coli ECRC98 | 0.24 | JDDGAC_09010 | ldtD | L,D-transpeptidase | 0.67 | JDDGAC_16105 | cadB | cadaverine/lysine antiporter | low | > 86 |
Escherichia coli ECRC101 | 0.24 | MCAODC_24790 | ldtD | L,D-transpeptidase | 0.67 | MCAODC_02980 | cadB | cadaverine/lysine antiporter | low | > 87 |
Escherichia coli ECOR38 | 0.24 | HEPCGN_23125 | ldtD | L,D-transpeptidase | 0.67 | HEPCGN_11105 | cadB | cadaverine/lysine antiporter | low | > 87 |
Escherichia coli ECRC99 | 0.24 | KEDOAH_22335 | ldtD | L,D-transpeptidase | 0.67 | KEDOAH_15695 | cadB | cadaverine/lysine antiporter | — | — |
Escherichia coli ECRC100 | 0.24 | OKFHMN_05400 | ldtD | L,D-transpeptidase | 0.67 | OKFHMN_12470 | cadB | cadaverine/lysine antiporter | low | > 80 |
Not shown: 11 genomes with orthologs for CSW01_06405 only; 5 genomes with orthologs for CSW01_01440 only