Pairwise Alignments

Query, 979 a.a., excinuclease ABC subunit UvrA from Rhodanobacter denitrificans FW104-10B01

Subject, 944 a.a., Excinuclease ABC subunit A from Pseudomonas fluorescens FW300-N2E2

 Score = 1343 bits (3476), Expect = 0.0
 Identities = 670/943 (71%), Positives = 790/943 (83%), Gaps = 4/943 (0%)

Query: 1   MDTIRIRGARTHNLKNIDLDLPRDQLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSSY 60
           +D I IRGARTHNLKNIDL LPRD+LIVITGLSGSGKSSLAFDT+YAEGQRRYVESLS+Y
Sbjct: 1   LDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGTPRC 120
           ARQFLSMMEKPDVD IEGLSPAISIEQKSTSHNPRSTVGTITE+YDYLRLLYARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRC 120

Query: 121 PDHGIPLEAQTVSQMVDATLALDPEQRYMLLAPVIRERKGEHVQVFEQLRAQGFVRARVD 180
           PDH IPLEAQTVSQMVD  LA     + MLLAPV+RERKGEH+ VFE+LRAQGFVRARV+
Sbjct: 121 PDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVVRERKGEHLMVFEELRAQGFVRARVN 180

Query: 181 GTVFDLDAVPPLTLRQKHTIEVVIDRFRPREDIKQRLAESFETALRLGDGLVILANMDAG 240
           G + +LD +P L  ++KH+I+VV+DRF+ R D++QRLAESFETAL+L DG+ ++A MD  
Sbjct: 181 GKLCELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMD-D 239

Query: 241 ANAKEQMLSSRYSCPVCDYSLPELEPRLFSFNSPIGACPSCDGLGVTQVFDAARVVGHPE 300
              +E + S+R++CP+C +++ ELEP+LFSFN+P GACP+CDGLGV Q FD  R+V + E
Sbjct: 240 EPGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLV-NGE 298

Query: 301 LPLSNGAVRGWDRRNAHYFQLILSLATHYGFDVDTPWNKLPADVQKAILYGSGKDRIAFR 360
           L L+ GA+RGWDRRN +YFQ++ SLA HY F +D P+N+LPAD QK IL GSG   + F+
Sbjct: 299 LTLAEGAIRGWDRRNVYYFQMLGSLAAHYKFSLDKPFNELPADQQKFILQGSGSQNVDFK 358

Query: 361 YITERGGKVTREHAFEGILPNLERRYKETESAAVREELAKYISDQPCPECAGQRLNRSAR 420
           Y+ +RG  V R H FEGI+PNLERRY+ETESA+VREELAK++S QPCP+C G RL R AR
Sbjct: 359 YLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREAR 418

Query: 421 NVFVADHALPSLTARSIDDALAFFEELKLAGWRGEIAVKIVKEIRERLSFLNDVGLNYLT 480
           +V+V +  LP++T+  I DA  +F  LKL G RGEIA KI+KEIRERL FL +VGL+YLT
Sbjct: 419 HVWVGEKTLPAVTSLPIGDATDYFGGLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLT 478

Query: 481 LDRQADSLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGN 540
           LDR AD+LSGGEAQRIRLASQIGAGLVGVMY+LDEPSIGLHQRDN+RLLGTL  LRD+GN
Sbjct: 479 LDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLKHLRDIGN 538

Query: 541 TVIVVEHDEDAIRMADHVLDIGPGAGVHGGEIVAQGSVQDMLDSPRSVTGQFLSGERAIE 600
           TVIVVEHDEDAIR+AD+V+DIGPGAGVHGG IVAQG+  +++  P S+TG++LSG   I+
Sbjct: 539 TVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAQGTAAEVMAHPDSLTGKYLSGRVKIK 598

Query: 601 VPKQRRLPNDDAYWLCLNGASGNNLKNVDLAIPAGLFTCVTGVSGSGKSTLVNDTLFRLA 660
           VP  +R P +    L L GA GNNL+NVDL IP GL TCVTGVSGSGKSTL+N+TLF L+
Sbjct: 599 VPA-KRTPRNKKLSLTLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLS 657

Query: 661 AAELNGASA-QPAPFQSVTGLELFDKVVDIDQSPIGRTPRSNPATYTGLFTPLRDMFSQV 719
           A  LNGA+  + A   S+ GLE  DKVVDIDQSPIGRTPRSNPATYTGLFTP+R++F+ V
Sbjct: 658 ATALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGV 717

Query: 720 PEARARGYTPGRFSFNVRGGRCEACEGDGMLKVEMHFLPDVYVPCDACHGKRYNRETLEI 779
           PE+R+RGY PGRFSFNV+GGRCEAC+GDG++KVEMHFLPD+YVPCD C  KRYNRETLEI
Sbjct: 718 PESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEI 777

Query: 780 LYKGHTIADVLDMTVEDALKLFENVPTIARKLDTLRAVGLDYIKLGQSATTLSGGEAQRV 839
            YKG  I + L+MT+E+A   F+ VP +ARKL TL  VGL YIKLGQSATTLSGGEAQRV
Sbjct: 778 KYKGKNIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRV 837

Query: 840 KLSKELSKRDTGNTLYILDEPTTGLHFHDIEQLLDVLHQLVDQGNTVVVIEHNLDVIKTA 899
           KLS+ELSKRDTG TLYILDEPTTGLHF DI+QLLDVLH+L D GNTVVVIEHNLDVIKTA
Sbjct: 838 KLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTA 897

Query: 900 DWVVDLGPEGGAGGGRILVAGTPETVAATPESHTGHFLAPHLK 942
           DW+VDLGPEGG+ GG+I+  GTPE VA   +S+TG++L P L+
Sbjct: 898 DWLVDLGPEGGSKGGQIIAVGTPEQVAEMKQSYTGYYLKPLLE 940



 Score =  139 bits (351), Expect = 7e-37
 Identities = 81/200 (40%), Positives = 109/200 (54%), Gaps = 15/200 (7%)

Query: 763 PCDACHGKRYNRETLEILYKGHTIADVLDMTVEDALKLFENVPTIARK------------ 810
           PC  C G R  RE   +     T+  V  + + DA   F  +    R+            
Sbjct: 404 PCPDCRGTRLRREARHVWVGEKTLPAVTSLPIGDATDYFGGLKLTGRRGEIADKILKEIR 463

Query: 811 --LDTLRAVGLDYIKLGQSATTLSGGEAQRVKLSKELSKRDTGNTLYILDEPTTGLHFHD 868
             L  L  VGLDY+ L +SA TLSGGEAQR++L+ ++     G  +YILDEP+ GLH  D
Sbjct: 464 ERLQFLVNVGLDYLTLDRSADTLSGGEAQRIRLASQIGAGLVG-VMYILDEPSIGLHQRD 522

Query: 869 IEQLLDVLHQLVDQGNTVVVIEHNLDVIKTADWVVDLGPEGGAGGGRILVAGTPETVAAT 928
            ++LL  L  L D GNTV+V+EH+ D I+ AD+VVD+GP  G  GG I+  GT   V A 
Sbjct: 523 NDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAQGTAAEVMAH 582

Query: 929 PESHTGHFLAPHLKPAKPKK 948
           P+S TG +L+  +K   P K
Sbjct: 583 PDSLTGKYLSGRVKIKVPAK 602