Pairwise Alignments

Query, 979 a.a., excinuclease ABC subunit UvrA from Rhodanobacter denitrificans FW104-10B01

Subject, 944 a.a., excinuclease ABC subunit UvrA from Pseudomonas fluorescens SBW25-INTG

 Score = 1342 bits (3474), Expect = 0.0
 Identities = 667/942 (70%), Positives = 791/942 (83%), Gaps = 4/942 (0%)

Query: 1   MDTIRIRGARTHNLKNIDLDLPRDQLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSSY 60
           MD I IRGARTHNLKNIDL LPRD+LIVITGLSGSGKSSLAFDT+YAEGQRRYVESLS+Y
Sbjct: 1   MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGTPRC 120
           ARQFLSMMEKPDVD IEGLSPAISIEQKSTSHNPRSTVGTITE+YDYLRLLYARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRC 120

Query: 121 PDHGIPLEAQTVSQMVDATLALDPEQRYMLLAPVIRERKGEHVQVFEQLRAQGFVRARVD 180
           PDH IPLEAQTVSQMVD  LA     + MLLAPVIRERKGEH+ VFE+LRAQGFVRAR++
Sbjct: 121 PDHDIPLEAQTVSQMVDLVLAQPEGAKLMLLAPVIRERKGEHLSVFEELRAQGFVRARIN 180

Query: 181 GTVFDLDAVPPLTLRQKHTIEVVIDRFRPREDIKQRLAESFETALRLGDGLVILANMDAG 240
           G +++LD  P L  ++KH+I+VV+DRF+ R D++QRLAESFETAL+L DG+ ++A MD  
Sbjct: 181 GKLYELDEAPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMD-D 239

Query: 241 ANAKEQMLSSRYSCPVCDYSLPELEPRLFSFNSPIGACPSCDGLGVTQVFDAARVVGHPE 300
              +E + S+R++CP+C +++ ELEP+LFSFN+P GACP+CDGLGV Q FD  R+V + +
Sbjct: 240 EPGEEIIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLV-NGD 298

Query: 301 LPLSNGAVRGWDRRNAHYFQLILSLATHYGFDVDTPWNKLPADVQKAILYGSGKDRIAFR 360
           L L+ GA+RGWDRRN +YFQ++ SLA+HY F ++ P+N+LPAD QK IL+GSG   + F+
Sbjct: 299 LTLAEGAIRGWDRRNVYYFQMLGSLASHYKFSLEVPFNQLPADQQKVILHGSGSQNVDFK 358

Query: 361 YITERGGKVTREHAFEGILPNLERRYKETESAAVREELAKYISDQPCPECAGQRLNRSAR 420
           Y+ +RG  V R H FEGI+PNLERRY+ETESA+VREELAK++S QPCP+C G RL R AR
Sbjct: 359 YLNDRGDIVKRSHPFEGIVPNLERRYRETESASVREELAKFLSTQPCPDCRGTRLRREAR 418

Query: 421 NVFVADHALPSLTARSIDDALAFFEELKLAGWRGEIAVKIVKEIRERLSFLNDVGLNYLT 480
           +V+V +  LP++T   I DA  +F  LKL G RGEIA KI+KEIRERL FL +VGL+YL+
Sbjct: 419 HVWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIRERLQFLVNVGLDYLS 478

Query: 481 LDRQADSLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGN 540
           LDR AD+LSGGEAQRIRLASQIGAGLVGV+Y+LDEPSIGLHQRDN+RLLGTL  LRD+GN
Sbjct: 479 LDRSADTLSGGEAQRIRLASQIGAGLVGVLYILDEPSIGLHQRDNDRLLGTLKHLRDIGN 538

Query: 541 TVIVVEHDEDAIRMADHVLDIGPGAGVHGGEIVAQGSVQDMLDSPRSVTGQFLSGERAIE 600
           TVIVVEHDEDAIR+AD+V+DIGPGAGVHGG IVA+G+  +++  P S+TG++LSG   I 
Sbjct: 539 TVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMAHPDSLTGKYLSGRVKIA 598

Query: 601 VPKQRRLPNDDAYWLCLNGASGNNLKNVDLAIPAGLFTCVTGVSGSGKSTLVNDTLFRLA 660
           VP  +R P +    L L GA GNNL+NVDL IP GL TCVTGVSGSGKSTL+N+TLF L+
Sbjct: 599 VPA-KRTPRNKKLALHLKGARGNNLRNVDLEIPLGLLTCVTGVSGSGKSTLINNTLFPLS 657

Query: 661 AAELNGASA-QPAPFQSVTGLELFDKVVDIDQSPIGRTPRSNPATYTGLFTPLRDMFSQV 719
           A  LNGA+  + A   S+ GLE  DKVVDIDQSPIGRTPRSNPATYTGLFTP+R++F+ V
Sbjct: 658 ATALNGATTLEAAAHDSIKGLEHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGV 717

Query: 720 PEARARGYTPGRFSFNVRGGRCEACEGDGMLKVEMHFLPDVYVPCDACHGKRYNRETLEI 779
           PE+R+RGY PGRFSFNV+GGRCEAC+GDG++KVEMHFLPD+YVPCD C  KRYNRETLEI
Sbjct: 718 PESRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEI 777

Query: 780 LYKGHTIADVLDMTVEDALKLFENVPTIARKLDTLRAVGLDYIKLGQSATTLSGGEAQRV 839
            YKG +I + L+MT+E+A   F+ VP +ARKL TL  VGL YIKLGQSATTLSGGEAQRV
Sbjct: 778 KYKGKSIHETLEMTIEEARVFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRV 837

Query: 840 KLSKELSKRDTGNTLYILDEPTTGLHFHDIEQLLDVLHQLVDQGNTVVVIEHNLDVIKTA 899
           KLS+ELSKRDTG TLYILDEPTTGLHF DI+QLLDVLH+L D GNTVVVIEHNLDVIKTA
Sbjct: 838 KLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTA 897

Query: 900 DWVVDLGPEGGAGGGRILVAGTPETVAATPESHTGHFLAPHL 941
           DW+VDLGPEGG+ GG+I+  GTPE V+  P+SHTG++L P L
Sbjct: 898 DWLVDLGPEGGSKGGQIIAVGTPEQVSEMPQSHTGYYLKPLL 939



 Score =  147 bits (370), Expect = 4e-39
 Identities = 88/217 (40%), Positives = 119/217 (54%), Gaps = 17/217 (7%)

Query: 763 PCDACHGKRYNRETLEILYKGHTIADVLDMTVEDALKLF--------------ENVPTIA 808
           PC  C G R  RE   +     T+  V ++ + DA + F              + +  I 
Sbjct: 404 PCPDCRGTRLRREARHVWVGEKTLPAVTNLPIGDACEYFGVLKLTGRRGEIADKILKEIR 463

Query: 809 RKLDTLRAVGLDYIKLGQSATTLSGGEAQRVKLSKELSKRDTGNTLYILDEPTTGLHFHD 868
            +L  L  VGLDY+ L +SA TLSGGEAQR++L+ ++     G  LYILDEP+ GLH  D
Sbjct: 464 ERLQFLVNVGLDYLSLDRSADTLSGGEAQRIRLASQIGAGLVG-VLYILDEPSIGLHQRD 522

Query: 869 IEQLLDVLHQLVDQGNTVVVIEHNLDVIKTADWVVDLGPEGGAGGGRILVAGTPETVAAT 928
            ++LL  L  L D GNTV+V+EH+ D I+ AD+VVD+GP  G  GG I+  GTP  V A 
Sbjct: 523 NDRLLGTLKHLRDIGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGHIVAEGTPAEVMAH 582

Query: 929 PESHTGHFLAPHLKPAKPKKPGAATRVKAATRHIASA 965
           P+S TG +L+  +K A P K     R K    H+  A
Sbjct: 583 PDSLTGKYLSGRVKIAVPAK--RTPRNKKLALHLKGA 617