Pairwise Alignments

Query, 464 a.a., flagellar filament capping protein FliD from Rhodanobacter denitrificans FW104-10B01

Subject, 456 a.a., flagellar hook-associated protein FliD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  236 bits (601), Expect = 2e-66
 Identities = 157/459 (34%), Positives = 240/459 (52%), Gaps = 15/459 (3%)

Query: 15  LTSMGVGSGLDVASLVSQLVAAKKAPQQNQITSQANAANTQLSALGQVSAALSALQSAMA 74
           +++ G+GSGLD++++V  LV A+KAP++       ++   ++SA+G + +ALS  Q A+ 
Sbjct: 3   ISATGMGSGLDISNIVKVLVDAEKAPKEAMFNKTEDSIKAKVSAMGTLKSALSTFQDAVK 62

Query: 75  PLTDGSAFTARTVGSSDTTVLGASATGTPVNGSYNIVVTQLASALKASSGAFASSTTAVG 134
            L  G A   R +  S    L A A  T   GSY I V Q+A+  K +    A +T  VG
Sbjct: 63  KLQTGDALNQRKISVSTDAYLSAKAEKTAQAGSYGIKVEQVATNHKIAGTNVADATQPVG 122

Query: 135 TGTLTIAVGSQSMSLTLDSTNNSLAAIRDAINGSSSNPGVSATIVTGTDGAHLVLSGTRT 194
            G+L   V  +S S+ + +T +SLA I   +N +S N GV+AT++T   G+ LV S  +T
Sbjct: 123 EGSLAFGVNGKSFSVDIAAT-DSLAEIAKKVNEASDNVGVTATVITSDAGSRLVFSANKT 181

Query: 195 GAANGFSVSSSGGDGGLAALKYDPAATTGNGLSVVTAAADAKYSIDGLAASSAGNTVSSA 254
           G  N  S++++   G      +    T     S +  A +A   IDG   +S  N V +A
Sbjct: 182 GEDNQISLTATNTSGSGVTDMFGSGNT-----STLQDAKNAVLYIDGQKVTSQSNEVKNA 236

Query: 255 IDGLTLNLVKAG---SSTLSVSSDSSKATGALTNLVNTYNSFVGIYQNLTRYDATSGTAG 311
           I G+TLNL  A    ++T+ +  D+      +   V+ YNS V     ++ YD    TA 
Sbjct: 237 ITGVTLNLTNADVAKTTTVKIEQDNEAVKTNVQAFVDAYNSLVTTIDKMSSYDKDKKTAA 296

Query: 312 ALLGDATLNGINNTLSSIVGG---TANGASLSSIGISLQVD--GTLKLDSGKLATALGDG 366
           AL GD+ +  I + L S+  G   TA+G S++   I ++ D  G L +D  KL  AL + 
Sbjct: 297 ALQGDSMIRSIESQLRSVASGRVPTADGGSIALYDIGIKADRYGKLSVDDTKLNKALTED 356

Query: 367 GKQVGALFGGTN-GFAAKLNAPLTSWVGSQGVLASRTSSIGQQLSDLANQQTALNSRMDS 425
              V ALF   + G A + N    S+V S G++A R SS   Q S LA+Q+ A   +MD 
Sbjct: 357 MSSVEALFATPDKGLANRFNDLANSYVKSSGLIADRQSSYTTQQSRLADQRAAFTLKMDQ 416

Query: 426 LTALYQAQFTALDTLMSKLNSTSTYLQQQFDALTNSSKK 464
           LTA    QF A+D ++ KLN  S+ L  + ++L  + KK
Sbjct: 417 LTARLTKQFNAMDLVVGKLNQQSSGLVDRLNSLPGAVKK 455