Pairwise Alignments

Query, 767 a.a., penicillin-binding protein 1C from Rhodanobacter denitrificans FW104-10B01

Subject, 760 a.a., penicillin-binding protein 1C, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  352 bits (904), Expect = e-101
 Identities = 275/773 (35%), Positives = 372/773 (48%), Gaps = 39/773 (5%)

Query: 2   IAVLLVAVLLDRLFPLHLPAPDSGSTVVLARDGTPLRAFADSDGVWRYPTTAKQVSPLYL 61
           +AV+L+ + L    PL    P S    VLA DG+ LR    SDG +R     + +SP  +
Sbjct: 11  LAVILLGLRLWPAQPLSQLMPSSRE--VLAADGSLLRLTLASDGQYRLWQDLEDISPTMI 68

Query: 62  QALLTYEDRRFYRHRGVNPYALLRGLAGGLRHGRIVSGGSTLTMQ-VARIIEPIPHSFRG 120
           Q +L  EDR FY H GVNP AL+R        G    GGSTLTMQ V R+ E    S  G
Sbjct: 69  QVMLLKEDRYFYYHLGVNPVALVRATFATYVDGD-RQGGSTLTMQLVRRVYEINSRSVLG 127

Query: 121 KLVQILRALQLEAHLSKAQILDLYLNHAPFGGPIEGVEAASWAYLGKPAGRLSRAEAALL 180
           KL QIL A  LEA  SK ++L+ YLN AP GG IEGV AAS  Y  K AG LS +EA  L
Sbjct: 128 KLEQILAAFWLEARYSKRELLEAYLNLAPMGGNIEGVGAASQIYFHKVAGELSLSEALSL 187

Query: 181 AVLPQSPSRLRPDRRPEAARAARDKVLKRMRDLGVWSAAAVRDAAIEPVVARSLRAPLSA 240
           AV+PQSP+R    R     +AARD++    +              +  + A     P  A
Sbjct: 188 AVMPQSPARRA--RFQADFQAARDRLALFWQQTYPDDPRNQGLQVLTALGAERNELPFKA 245

Query: 241 ALLAERLHRQQPQARRIASTIDANLQRAAEDRVSAYLS--RLPAHTSAALLVVDNATLEA 298
              A R  RQ   AR + +TI+  LQ   E R+  Y++  R     +A  L++D      
Sbjct: 246 PHFARRQLRQ--DARIVHTTIEPKLQALLELRIRQYITSKRHLGVNNATALLIDTRDQAI 303

Query: 299 RIYVGTSDFADPQRHGYIDMVNAPRSPGSTLKPFLYGLALDDGLIHSQSLLVDAPQDFGG 358
           + +VG++DF +P  +G +D V A RSPGSTLKPFLY L LD G+IH QS+L DAP  FG 
Sbjct: 304 KAWVGSADFFNPMIYGQVDGVTARRSPGSTLKPFLYALGLDQGIIHPQSILKDAPMAFGS 363

Query: 359 YKPGNFDEAFSGPVSAAEALQRSLNVPAVDVLDRVGPNRFVARLANGGVDLGLPAGAQPN 418
           ++P NFD  F+GP+SA +AL +S N+PAV +  ++        L    +  GL   +   
Sbjct: 364 FEPENFDHRFTGPISARDALIKSRNLPAVWLAGQLTDPNLYGFLRQAQI-FGLRQESHYG 422

Query: 419 LSIILGGASTRLENLVGAYTAFANGGLAGTPRYTTEQPAR--ARRLLSPGAAWIIRDILA 476
           L++ LGG    +  L   Y   A+ G     R  TEQP    + +LLSP A++++ D+L 
Sbjct: 423 LALALGGGELTMMELGRLYLMLASEGRYYPLRERTEQPINPPSMQLLSPAASFLVLDMLK 482

Query: 477 SNPADVEGGPLAGAINRHATVAWKTGTSYGYRDAWSIGVTDRWTVGVWIGRPDGTPSPGQ 536
            NP   +G P  G       VAWKTGTS+G+ DAWS GV   + + VW+G  D TP+   
Sbjct: 483 DNPR-ADGLPRQG-----WRVAWKTGTSWGFHDAWSAGVAGPYVLVVWVGNFDATPNAAF 536

Query: 537 YGAVTALPLLFQIVD----MLPSRGGHARAQPASVKSVDICWPLGGAVAATDPAL-CRQR 591
            GA  A PL F I D     LPS      A P +VK V+IC     A +   P L C + 
Sbjct: 537 IGAEIAGPLFFNITDALQASLPSTADRIWAPPNTVKKVNIC-----AESGELPNLWCPKV 591

Query: 592 RSAWVLDDALPPTFAERDLGAWSSGLLTLRVNTKGQRLSGACHASHEHTIQLARWPALAT 651
              W +    P   +      W         N  G  +     A  +H    A WP+   
Sbjct: 592 IEGWFIPGVSPVKVSTLHRPVWVD-------NQTGMAVCPPYDAQTQHQEIFAFWPSDMA 644

Query: 652 PWLGVDDRARSALPPLAPGCA-ADSLDRATPIRIAGLGNAV-TLRRAPNSEHPLRVTLRA 709
                    R   P L   C  A  L    P+  + L N   +LR++   EH + +   A
Sbjct: 645 SLFEQAGLPRKLAPQLPESCRNAIQLSNIDPVIRSPLKNVTYSLRQSHLHEH-IALLADA 703

Query: 710 LGTQTTVQWLLNGRLQGSSDADAAIAISLPQAGDYRITALARDGAFATLALRV 762
               + + W +   L G S    A+      +GDY+++     G   +L L V
Sbjct: 704 APDASMLYWFVGRDLIGQSLPKQALEWRPSTSGDYKLSVTDDKGRSTSLNLNV 756