Pairwise Alignments

Query, 342 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  132 bits (331), Expect = 2e-35
 Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 9/322 (2%)

Query: 18  TKTMTSAVGDFVRDSVQADRIQVNGIKVVSILLIIWGHLSVDNFLTPANLNAIMYSVSAI 77
           T+TMT+   D  +  +  + +      +  + L++       NF T  NL  I+   S  
Sbjct: 9   TRTMTNTTSDNRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVN 68

Query: 78  GIAAVGMAFITLSGNLFMLSMAATAALSTIVFASTLHFGLPV--ALLSVSVLGIAIGSIQ 135
            I AVGM  + L+  +  LS+ +  AL     A+ +   +PV  A+ +  + G A+G+I 
Sbjct: 69  AIIAVGMTLVILTAGID-LSVGSVLALCGAFAATLVAMEVPVLVAVPTALLAGAALGAIS 127

Query: 136 GVVVGTARVNPIIATIAVASIVMGVGS-YVSGGMTVVGKGDAS----WLGIGKFASLVPN 190
           G+++   +V   IAT+   +++ GV   Y  G     G  D +    W G G +   +P 
Sbjct: 128 GIIIAKGKVQAFIATLVTMTLLRGVTMVYTDGRPISTGFTDTADTFAWFGTG-YTLGIPV 186

Query: 191 QLVIFLAFSLAANYWVERTRFGRELRLIGLNPVTAAYSGIRVPRTLVIAFVIAGFSAALA 250
            + + +     A Y +  TRFGR +  +G N      SGI V R  +  + I G  AALA
Sbjct: 187 PVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICGLLAALA 246

Query: 251 GGLFASQAGQGNLKLAAGLDFDAIAAVLVAGISIRGGQGKIIDAVYGAIFLALIGNLLLV 310
           G +  S+          G + DAIAAV++ G S+ GG+G+I+  + GA+ +  + N L +
Sbjct: 247 GIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFLNNALNL 306

Query: 311 HGLSFEIQLMVKGAVVVLAVIL 332
             +S   Q++ K  V++LAV++
Sbjct: 307 LDVSSYYQMIAKAVVILLAVLV 328