Pairwise Alignments

Query, 342 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 317 a.a., L-arabinose transporter permease from Sinorhizobium meliloti 1021

 Score =  133 bits (334), Expect = 7e-36
 Identities = 89/295 (30%), Positives = 148/295 (50%), Gaps = 7/295 (2%)

Query: 42  GIKVVSILLIIWGHLSVDNFLTPANLNAIMYSVSAIGIAAVGMAFITLSGNLFMLSMAAT 101
           G+ V+     +   L+V NFLT  N+  ++ SV  IG+ A  M F   S + F LS+ +T
Sbjct: 14  GLLVIFAAAFVVVALTVPNFLTERNMLGLLQSVVTIGVVACTMMFCLASRD-FDLSVGST 72

Query: 102 AALSTIV--FASTLHFGLPVALLSVSVLGIAIGSIQGVVVGTARVNPIIATIAVASIVMG 159
            A S +V   AS     + + LL+    G  +G   G+V+   R+N +I T+A   IV G
Sbjct: 73  VAFSGMVAVMASNATGSIVLGLLAALACGGIVGLANGIVIARFRINALITTLATMQIVRG 132

Query: 160 VGSYVSGGMTVVGKGDASW--LGIGKFASLVPNQLVIFLAFSLAANYWVERTRFGRELRL 217
                S G  V G  D  +  L + KF + VP  + +   F +   + + RT FG+    
Sbjct: 133 FALIASDGRAV-GINDPVFYQLSLSKFLT-VPTPIWVMALFFIVFGFLLNRTVFGKNTLA 190

Query: 218 IGLNPVTAAYSGIRVPRTLVIAFVIAGFSAALAGGLFASQAGQGNLKLAAGLDFDAIAAV 277
           IG NP  +  +G+ V R  +  F + G   A+AG L AS+   G    A GL+   I+A 
Sbjct: 191 IGGNPEASRLAGVDVARMRIWIFALQGLVCAVAGVLLASRITSGQPNAATGLELSVISAC 250

Query: 278 LVAGISIRGGQGKIIDAVYGAIFLALIGNLLLVHGLSFEIQLMVKGAVVVLAVIL 332
           ++ G+S+ GG+  +   V G + + +  N++ +  +    Q +V+G ++++AV+L
Sbjct: 251 VLGGVSLAGGRATMTGVVVGVLIMGIAENVMNLLNIQAFYQYVVRGLILLIAVLL 305