Pairwise Alignments

Query, 423 a.a., Long-chain fatty acid transport protein from Pseudomonas fluorescens FW300-N2E2

Subject, 437 a.a., long-chain fatty acid transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (484), Expect = 5e-53
 Identities = 129/446 (28%), Positives = 223/446 (50%), Gaps = 32/446 (7%)

Query: 1   MKRILLKTPMSLAVALATSQVFASGFALNEQSISGMGAGFAGRSSSAEDASTVFGNPAGM 60
           M++ LL   ++ A+   T+QV A+GF L E S +G+G  FAG ++ A++AS  F NPA +
Sbjct: 1   MQKRLLTLAVTAALLSTTTQVHAAGFQLAEYSATGLGRAFAGEAAMADNASAQFRNPAML 60

Query: 61  SRLKKEQVSLGAATLFTQSDISQTRSTFGGREDG----DMVPTTTVPMGYYVKPVDEHWA 116
           + L   Q++ GA  +    D+ +   T G         DM     +P  Y    +++ W 
Sbjct: 61  TYLTGTQMTTGAILVMPNIDV-EGEVTVGNVTQATAAKDMAGNAVIPNFYVSHQLNQQWF 119

Query: 117 VGVGFYVPFGLITDYGSDFAGRYYGNKSEVTTLTFQPTVSYAFNDKVSIGFGPTINRISG 176
           +GV     FG+ T+   DF G  +GN++ +  +   P V+Y  N+++S+G G  +    G
Sbjct: 120 IGVALGTNFGMATELDDDFLGSQFGNEASIKAIEINPNVAYRINEQLSVGGGVRLVLGEG 179

Query: 177 EISG------MVPNPLS--PGSNDGKLK-SNGDDTALGFNAGILVQATDQTRLGLTYHSK 227
            I        ++P P+   P      LK   GDD + G+  G   Q     R+GL Y S 
Sbjct: 180 SIGAKSSADAVLPTPIGNLPVPKGTTLKYMEGDDISWGWQLGGAWQINADHRIGLNYRSA 239

Query: 228 VSYHLDAKSKLTGGIFSVLGVSGRSYDASLDVDTPESVDISLTHQLNDDWTMYLGSTWTR 287
           V   L+ ++   G  F+ L  + +    S+++  P +V+++  HQL     ++    WT 
Sbjct: 240 VDQRLEGEAN--GLAFNPLAPN-QKLAGSMELSLPATVELASFHQLTPQLAVHASVNWTD 296

Query: 288 WSRFKELTIENSGLPALLSGTLGTVSEEQNWHDTWAHAIGAAYKLNDQWVLRAGLSVDQS 347
           WS F++L    + +P+L   T   + +++NW D++  A+GA Y+L+DQ  LRAG++ D S
Sbjct: 297 WSSFEKL---EAVIPSLKVPT--QLVKQENWEDSYRFALGATYRLDDQSSLRAGVAYDMS 351

Query: 348 PANNTNRGPRIPTGDRTVLSFGAGWTPVEEVTIDVAYSY-LQEESVRIN-----ETSSTR 401
             ++ NR   IP  +R  LS G G+   +++ +D   +Y + +ES  +      ++ ++ 
Sbjct: 352 AVSDANRTLTIPEMNRVWLSAGYGYQFSKQLDLDFGVTYIIADESPVVEPRPGIDSDNSA 411

Query: 402 GAYSSKYRNSASG----FGTSVSYRF 423
             +   +  + SG    FG   SYRF
Sbjct: 412 ALFGGTFSGTTSGNILLFGVQASYRF 437