Pairwise Alignments

Query, 500 a.a., KaiC from Pseudomonas fluorescens FW300-N2E2

Subject, 560 a.a., circadian clock protein KaiC (NCBI) from Rhodospirillum rubrum S1H

 Score =  139 bits (349), Expect = 3e-37
 Identities = 131/486 (26%), Positives = 212/486 (43%), Gaps = 28/486 (5%)

Query: 11  KAATGIEGLDDVLSGGLSRGHVFLLEGEPGTGKTTVALHFLLAGAKA-GERSLYITLSET 69
           K+ TGI G D++  GGL  G   L+ G  G GKT  A  FL+ G K   E  ++++  E 
Sbjct: 9   KSRTGIAGFDELTLGGLPTGRPTLVCGSAGCGKTLFAATFLVHGVKDFDEPGVFVSFEER 68

Query: 70  ERELRQGATSHGWTLDDNIHIFELTPPESLLNAEH----QQSLLYSSDLELGEATRQIFE 125
             ++     S G+ LDD I        E  +  EH       +    D +L     ++  
Sbjct: 69  PVDIIDNVASLGFHLDDLIE-------EGRVVIEHIAVDPSEVAEIGDYDLEGLFLRLEL 121

Query: 126 VVERVKPTRVVLDSLSEIRLLAQSSLRYRRQILAIKHYFVRYDATVLLLDD-----LTTE 180
            ++ +   RVVLD++  +     +    R +I  +  +      T ++  +     LT +
Sbjct: 122 AIDTIGAKRVVLDTIESLFSAFSNPAILRAEIRRLFDWLKEKGMTTVITGERGEGSLTRQ 181

Query: 181 SLDKTVHSVAHGVIRLEELTPNYGAERRRIRVVKYRGQKYRGGYHDFTIMGDGVHVFPRL 240
            L++ V      V+ L+    N     RR+R+VKYRG  +    + F I  DG  V P +
Sbjct: 182 GLEEYVSDC---VLLLDHRVENQ-ISTRRLRIVKYRGTNHGTNEYPFLIDEDGFSVLP-V 236

Query: 241 VAAEHRGQYLRQQLSSGIGEMDALL-GGGIETGSSTLILGPAGTGKSLIAMIFAAAAVHR 299
            A     +   +++S+G+ ++DA+L GGG   GSS L+ G AG+GKS +A  F  A    
Sbjct: 237 SALGLSHKIYDERISTGVADLDAMLSGGGFHRGSSILVSGVAGSGKSSLAASFVDATCRA 296

Query: 300 GEKAALFIFDEELGLLFERMKNIGIDLQALQETGNLLIEQVDAAELSPGEFSHRVRRCVD 359
           GE    F F+E        MK+IGIDL     +G L          S       V R V 
Sbjct: 297 GESVIYFSFEESHEQATRNMKSIGIDLGQWMASGQLKYIATRPTFYSLEMHLAIVLREVI 356

Query: 360 EGDIKTVVIDSINGY--QAAMPEENALVLHMHELLLYLNRKGAATFMTVAQHGLVGDMQA 417
           +     V++D I+ +       E   ++L + + L      G  T +  +   L+   + 
Sbjct: 357 KLKPSLVILDPISAFTESGERLEVQGMLLRIVDFLKSRGVTGVFTHLMQSGDNLI---KT 413

Query: 418 PVDITYLADTVILLRYFEALGKVRRAISIIKKRTGSHESTIREYRISGLGMTIGEPLEAF 477
              ++ L D  ILL   E  G+  R + ++K R   H + +RE+ +S  G+++  P    
Sbjct: 414 DAGLSSLMDAWILLLNREVNGEFNRELYLLKARGMEHSNQVREFVMSRSGISLLPPYIGE 473

Query: 478 QGVLRG 483
            G L G
Sbjct: 474 GGALTG 479



 Score = 61.2 bits (147), Expect = 9e-14
 Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 30/249 (12%)

Query: 1   LSTSNELISAKAATGIEGLDDVLS-GGLSRGHVFLLEGEPGTGKTTVALHFLLAGAKAGE 59
           L  S+++   + +TG+  LD +LS GG  RG   L+ G  G+GK+++A  F+ A  +AGE
Sbjct: 239 LGLSHKIYDERISTGVADLDAMLSGGGFHRGSSILVSGVAGSGKSSLAASFVDATCRAGE 298

Query: 60  RSLYITLSETERELRQGATSHG-----WTLDDNIHIFELTPPESLLNAEHQQSLLYSSDL 114
             +Y +  E+  +  +   S G     W     +      P              YS ++
Sbjct: 299 SVIYFSFEESHEQATRNMKSIGIDLGQWMASGQLKYIATRP------------TFYSLEM 346

Query: 115 ELGEATRQIFEVVERVKPTRVVLDSLSEI-----RLLAQSSLRYRRQILAIKHYFVRYDA 169
            L    R++     ++KP+ V+LD +S       RL  Q  L   R +  +K   V    
Sbjct: 347 HLAIVLREVI----KLKPSLVILDPISAFTESGERLEVQGML--LRIVDFLKSRGVTGVF 400

Query: 170 TVLLLDDLTTESLDKTVHSVAHGVIRLEELTPNYGAERRRIRVVKYRGQKYRGGYHDFTI 229
           T L+         D  + S+    I L     N G   R + ++K RG ++     +F +
Sbjct: 401 THLMQSGDNLIKTDAGLSSLMDAWILLLNREVN-GEFNRELYLLKARGMEHSNQVREFVM 459

Query: 230 MGDGVHVFP 238
              G+ + P
Sbjct: 460 SRSGISLLP 468