Pairwise Alignments

Query, 500 a.a., Na+/H+ antiporter NhaB from Pseudomonas fluorescens FW300-N2E2

Subject, 531 a.a., sodium/proton antiporter (RefSeq) from Shewanella loihica PV-4

 Score =  612 bits (1578), Expect = e-179
 Identities = 299/504 (59%), Positives = 386/504 (76%), Gaps = 15/504 (2%)

Query: 1   MSGSMAQAFAHNFLGHSPRWYKACVITFLILNAVVLWTLGPVVAGWMLVVEFIFTLAMAL 60
           M  +M+QAF  NFLG+SP+W+K  +++FL++N +V + L P VAGW+LVVEFIFTLAMAL
Sbjct: 1   MPVTMSQAFIDNFLGNSPKWFKIAILSFLVINPIVFY-LNPFVAGWLLVVEFIFTLAMAL 59

Query: 61  KCYPLMPGGLLLVEALVMGMTTPKALYDELLHNFPVILLLMFMVAGIYFMKDLLLFLFSR 120
           KCYPL PGGLL +EA+++GMT+P  +  E+  N  V+LLL+FMVAGIYFMK LLLF+F++
Sbjct: 60  KCYPLQPGGLLAIEAVIIGMTSPSQVLHEIEANLEVLLLLIFMVAGIYFMKQLLLFVFTK 119

Query: 121 LLLGVRSKALLSLMFCFLSAFLSAFLDALTVTAVIISAAVGFYAVYHRVASGNDPRQDSN 180
           ++  +RSK ++SLMFC  SAFLSAFLDALTV AVII+ AVGFY++YH+VASG       +
Sbjct: 120 MITKIRSKVVVSLMFCIASAFLSAFLDALTVIAVIIAVAVGFYSIYHKVASGK------S 173

Query: 181 VDEDHDLPSSHH--------EDLNQFRAFLRSLLMHGAVGTALGGVCTLVGEPQNLLIGH 232
             +DHD  S  H        ++L  FR FLR+LLMH  +GTALGGVCT+VGEPQNL+I  
Sbjct: 174 FTDDHDHTSDSHGEGHSLCEDELEAFRGFLRNLLMHAGIGTALGGVCTMVGEPQNLIIAA 233

Query: 233 EMGWHFADFFVKVAPVSLPVLVAGLLTCVALEKLRWFGYGTLLPDNVRTVLADYAEQDNR 292
           +  W F +F +++ PV++PV ++G+ TC  +EK +WFGYG  LP+ V  +L+DYA  ++ 
Sbjct: 234 QANWQFGEFALRMGPVTVPVFISGIATCFLVEKFKWFGYGQQLPEAVHKILSDYASYEDA 293

Query: 293 ERTARQRAALIVQGIAALILIVGLALHIAEVGLIGLMVIVLITAFTGITDEHRLGNAFKD 352
            RT   +  L++Q    + LIVGLA H+A VGLIGL VI+L TAF G+T+EH LG AF++
Sbjct: 294 HRTKHDKIKLVIQAFVGVWLIVGLAFHLASVGLIGLSVIILTTAFNGVTNEHALGKAFEE 353

Query: 353 AMPFTALLVVFFAVVAVIHDQQLFTPLIQWVLALPADQQPGMLFIANGLLSAISDNVFVA 412
           A+PFTALL VFFA+V VI DQQLF P+IQW L+   + Q  + +IANGLLS +SDNVFV 
Sbjct: 354 ALPFTALLAVFFAIVGVIIDQQLFAPVIQWALSYEGNTQLVIFYIANGLLSMVSDNVFVG 413

Query: 413 TIYITEVKQAFVSGHMSREQFETLAVAINTGTNLPSVATPNGQAAFLFLLTSAIAPLIRL 472
           T+YI EVK A + G ++R+QF+ LAVAINTGTNLPSVATPNGQAAFLFLLTSAIAPLIRL
Sbjct: 414 TVYINEVKAALLDGQITRDQFDLLAVAINTGTNLPSVATPNGQAAFLFLLTSAIAPLIRL 473

Query: 473 SYGRMVWMALPYTVVMGGLGWYAV 496
           SYGRMVWMALPYT+V+  +G  A+
Sbjct: 474 SYGRMVWMALPYTIVLSIVGILAI 497