Pairwise Alignments
Query, 864 a.a., Probable type IV pilus assembly FimV-related transmembrane protein from Pseudomonas fluorescens FW300-N2E2
Subject, 895 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4
Score = 101 bits (252), Expect = 2e-25
Identities = 176/753 (23%), Positives = 302/753 (40%), Gaps = 132/753 (17%)
Query: 154 VTGATKPSQYT------TTPRDTLWEIAAKVRNGGSVQ--QTMLAIQALNPNAFINGNIN 205
+TG S+ T TT DT W IA K R SV Q M AI NP+AF + N N
Sbjct: 34 ITGPDGESRQTLRQYGPTTASDTFWSIAQKTRPDASVTIYQVMAAIYEANPHAFTSDNYN 93
Query: 206 LLKTGQVLRLPDPVQSTALPQPQAIAEVAAQNAAWRSGRRGVAGAGKQQLDATKRGRGEG 265
L+ G +L +P A+P+ A + + + WR + A K + TK+
Sbjct: 94 SLEKGMILLIPSKEVMLAIPKSLAKQQAESNDKGWRQ-KPQTAAKPKPVVTQTKQ----- 147
Query: 266 APAQAAGRDNLSLVSADSAKAGGKGKGAAGDAQ---------ALSNKLAVTQESLDSARR 316
AQA+ +V AD A + + A A+ +L+++LA Q+ L+
Sbjct: 148 --AQASEASQPEMVQADKPSAEQQKQIEALTAKLEAEQAKNLSLTDELARAQDKLNLGNN 205
Query: 317 DNEELKSRMADLQSQLDKLQRLIELKNNQLAKMQAEGAAVPPAGEAPPAMSAELTPAPAA 376
D+E L++++ + S++ +L+ + ++ Q A++ +E +L AA
Sbjct: 206 DSEMLQAKIDEQSSRIAELEEALLVQKEQKAQLNSE--------------VEQLRQQLAA 251
Query: 377 QAPTAAPAPEAAPEATPPAAPVEPTPAASNEQKYNDLLTNPILLGLIGG-GAVLLLLLLL 435
AT PA P E + + ++ NP+ LGL A+LLL+L+
Sbjct: 252 --------------ATQPAKPKEV------DDSWRTMMDNPLYLGLFAAIPALLLLVLVW 291
Query: 436 LLARRRKAQQEAEKHLRMARALEEEADFSPELDLPPSSFEGI----------DVPPPSVK 485
L +RR + EA + + + D P P S E + D +K
Sbjct: 292 LFIKRRNNKSEA---VESSTPVTPPMDDKPVAPAPEDSEEMMAVHLDTDDEADSLDSLMK 348
Query: 486 LEPKPAPAPAPVPKPAPVVAPVVVTPPIAAPLVAPAAERS---DDVLPQA--QSHIDRGR 540
++ A + P A +V +++P + DD+ +A + + +
Sbjct: 349 VDETQLKPEADLSDELPQEAAEMVVDAGDEQVMSPVEDEGQSLDDLWAEAMGEQEQEEAK 408
Query: 541 LNQAADLLEQGIKAE---PQRSDLRLKLMEVYGQQGDRDAFVAQERQLVANGENFAQVEQ 597
Q DL + AE PQ + ++ V + + AF A + A E +++
Sbjct: 409 ATQEDDL--DSLLAELDAPQEAP--IEETHVEEKSIEETAFEAPVLEEEATPE--TDLDE 462
Query: 598 LKSRFPAMVVATAA---GLAAATVAAELDAQYVKDLLEDKTPTDEELDNAFDLSLDDLET 654
L + F + A L A +L A+ V D+T +EE+ A + SL++++
Sbjct: 463 LLAEFEQETPSEDAKEEDLDALLAEFDLPAETV----NDETNVEEEI-RAEETSLEEIK- 516
Query: 655 TPVAPTPEPVAELDAFPEDDDLSFESVLKQQTEANESLDDLSEFDLD---LGAEAPTPVA 711
PE AE +A E L++ EA D+ E DLD G +A
Sbjct: 517 ------PEEAAEPEASEETLADEIAQELEEAIEAKGDEGDVDETDLDALLAGFDAEPAAQ 570
Query: 712 ALDDED---------FLLDLDDDLKGLDLPATETPALADIPADDLELPADFDLSLSDEMD 762
A D ED L + +D+++ DL A PA + E +D D
Sbjct: 571 ASDSEDDEIARQIAAELEEENDEVEEADLDALLAEFEPAAPASEPE---------ADVAD 621
Query: 763 AHDAPKDAFESELDDVNAELDRLSDSLGQPTFTAEDALVGAEDEPDFDFLSGTDEVATKL 822
A +A E+ ++ ELD ++ AE + +F G D+ A +
Sbjct: 622 LELAEDEAEETAPEETGPELDVAAE------LAAEQEESKSAGHAPLEFDLGEDKPAVEA 675
Query: 823 DLAQAYIDMGDNDGARDILGEVLSEGDATQKSE 855
D + ++DG D L +L++ ++ +++E
Sbjct: 676 DAEEEI--KAEDDGEVD-LDALLADLESVEEAE 705
Score = 67.8 bits (164), Expect = 3e-15
Identities = 101/368 (27%), Positives = 150/368 (40%), Gaps = 63/368 (17%)
Query: 520 PAAERSDDVLPQAQSHIDRGRLNQAADLLEQGIKAEPQRSDLRLKLMEVYGQQGDRDAFV 579
PAA+ SD S D AA+L E+ + E D L E + +A V
Sbjct: 567 PAAQASD-------SEDDEIARQIAAELEEENDEVEEADLDALLAEFEPAAPASEPEADV 619
Query: 580 AQ------ERQLVANGENFAQVEQLKSRFPAMVVATAAGLAAATVAAELDAQYVKDLLED 633
A E + A E +++ + +AG A D V+ E+
Sbjct: 620 ADLELAEDEAEETAPEETGPELDVAAELAAEQEESKSAGHAPLEFDLGEDKPAVEADAEE 679
Query: 634 KTPTDEELDNAFDLSLDDLETTPVAPTPEPVAELDAFPEDDDLSFESVLKQQTEANESLD 693
+ +++ + D L DLE+ A P+ E + F LK S D
Sbjct: 680 EIKAEDDGEVDLDALLADLESVEEAEEPKV--------EKGESGFFGDLKGN---KRSSD 728
Query: 694 DLSEFDLDLGAEAP----TPVAALDDEDFLLDLDDD--------LKGLDLPATETPALAD 741
++ E++ L ++AP TPV DD+ L LDDD L LD + PA A
Sbjct: 729 NMLEWESALTSDAPSAQETPVED-DDDGISLQLDDDDNLTVDQALAALDAAEKKRPARA- 786
Query: 742 IPADDLELPA------DFDLSLSDEMDAHDAPKDAFESELDDVNAELDRLSDSLGQPTFT 795
+P DL D D L +E D D ++ ELD ELD L +
Sbjct: 787 VPEHDLTAFQQDNGFIDID-RLLNEADEEQLDVDKYK-ELDVDMGELDSLMGNA------ 838
Query: 796 AEDALVGAEDEPDFDFLSGTDEVATKLDLAQAYIDMGDNDGARDILGEVLSEGDATQKSE 855
A+V +DE + V KLDLA+AYI++ D D A+ +L EV +G+ Q+ E
Sbjct: 839 ---AMVDVDDEEN--------AVNAKLDLARAYIEIDDMDSAKALLKEVELDGNERQQQE 887
Query: 856 AQEMLSRL 863
A+++L L
Sbjct: 888 AKKLLDEL 895
Score = 44.3 bits (103), Expect = 3e-08
Identities = 84/372 (22%), Positives = 146/372 (39%), Gaps = 76/372 (20%)
Query: 499 KPAPVVAPVVVTPPIAAPLVAPAAERSDDVLPQAQSHIDRGRLNQAADLLEQGIKAEPQR 558
K V + VTPP+ VAPA E S++++ H+D + AD L+ +K + +
Sbjct: 300 KSEAVESSTPVTPPMDDKPVAPAPEDSEEMMAV---HLDT---DDEADSLDSLMKVDETQ 353
Query: 559 SDLRLKLMEVYGQQGDRDAFVAQERQLVANGENFAQVEQLKSRFPAMVVATAAGLAAAT- 617
L + Q+ A + Q+++ E+ Q L + + A AT
Sbjct: 354 LKPEADLSDELPQEAAEMVVDAGDEQVMSPVEDEGQ--SLDDLWAEAMGEQEQEEAKATQ 411
Query: 618 ------VAAELDAQYVKDLLEDKTPTDEELDNAFDLSLDDLETTPVAPTPEPVAELDAFP 671
+ AELDA + E + AF+ PV E +A P
Sbjct: 412 EDDLDSLLAELDAPQEAPIEETHVEEKSIEETAFE---------------APVLEEEATP 456
Query: 672 EDDDLSFESVLKQQTEANESLDDLSEFDLD-LGAEAPTPVAALDDEDFLLDLDDDLKGLD 730
E D + +Q+T + +D E DLD L AE P ++DE +++++++
Sbjct: 457 ETDLDELLAEFEQETPS----EDAKEEDLDALLAEFDLPAETVNDE---TNVEEEIR--- 506
Query: 731 LPATETPALADIPADDLELPADFDLSLSDEMDAHDAPKDAFESELDDVNAELDRLSDSLG 790
E +L +I ++ P + +L+DE + EL+ ++ G
Sbjct: 507 ---AEETSLEEIKPEEAAEPEASEETLADE-----------------IAQELEEAIEAKG 546
Query: 791 QPTFTAEDALVGAEDEPDFD-FLSGTDEVATKLDLAQAYIDMGDNDGARDILGEVLSEGD 849
G DE D D L+G D + A D D++ AR I E+ E D
Sbjct: 547 DE---------GDVDETDLDALLAGFD-----AEPAAQASDSEDDEIARQIAAELEEEND 592
Query: 850 ATQKSEAQEMLS 861
++++ +L+
Sbjct: 593 EVEEADLDALLA 604