Pairwise Alignments

Query, 621 a.a., Transcriptional activator of acetoin dehydrogenase operon AcoR from Pseudomonas fluorescens FW300-N2E2

Subject, 616 a.a., sigma-54 dependent transcriptional regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  292 bits (748), Expect = 3e-83
 Identities = 204/620 (32%), Positives = 312/620 (50%), Gaps = 38/620 (6%)

Query: 24  PQLP-VPDLILDSWRRSLEQHHLDPGSLQGPRILSQDVLKQCRERSELFLNIASEEVARL 82
           P  P +   + DSW+RS+     +  +    R+   D+  +  +  +L   + S  +   
Sbjct: 5   PHFPTIQPWLADSWQRSIGAGLSEFHAADDLRLSHADLKHKHEQYQQLIELVQSHALPLF 64

Query: 83  HGRVRDADYCVLLTDAQGQTIDYRVETTIRNDCRKAGLYLGTCWSEGEEGTCGVAAVLTA 142
           +  +  ++  +LL+DA G  + +   +   +      L +G  W E  +GT  +   L A
Sbjct: 65  NQLMAQSNSRLLLSDADGYVLKHWGVSRYSSKLADVALDIGVNWLEQYKGTNAIGTALMA 124

Query: 143 KAPVTVHKRDHFRAAFIGLTCSAAPVFDPQGELLGVLDVSAVRSPDDRRSQHLIRQMVVQ 202
           K  V+V    HF      ++C+A P+F PQGE+LGVLD++   S   R SQ  +  +V  
Sbjct: 125 KQAVSVVGEQHFIRQNRFMSCTACPIFSPQGEMLGVLDIT---SEQQRHSQQTL-MLVSS 180

Query: 203 SAREIEQAFFMSSAQGYWVLRAHRNAGYVDSQPDFLFAWDDDGCLQALNPAARQYLLQHY 262
            A+++E A        ++ +        + S    +   D +G +   NP A+Q L Q  
Sbjct: 181 LAQQVETALLCHLPDSHYRIDLAAEPSLLSSGWQGIVIADSEGRIVGCNPMAKQLLSQAK 240

Query: 263 --GQLPQHIGQVFDQQL-LHRARDESLCSLDHAMHGRLSAPRQRASSRSRVAVTPLEIDP 319
               L  H+G  + +    HR     L +    +    SA   +   +S++ V     DP
Sbjct: 241 LGDSLELHLGDSWTRAGGFHRDLALHLHTQALGVTQTKSAKTIQDKPQSQLGVRFR--DP 298

Query: 320 RLADSLRLAVRVKDRNLPVLIQGETGSGKEVFARQLHQASQRRDRPFVALNCAAIPESLI 379
            L  + + A +V  + +P+L+ GETG GKE F ++LH  S RR +P VA+NCAA+P  L+
Sbjct: 299 LLERAWQQANKVITKQIPLLVLGETGVGKEQFVKKLHAQSSRRAQPLVAVNCAALPAELV 358

Query: 380 ESELFGYVAGAFTGASAKGMQGLLQQADGGTLFLDEIGDMPLALQTRLLRVLAEGEVAPL 439
           ESELFGY AGAFTGA+  G  G ++QA GG LFLDEIG+MP A Q+RLLRVL E EV P+
Sbjct: 359 ESELFGYQAGAFTGANRSGFIGKIRQAHGGFLFLDEIGEMPQAAQSRLLRVLQEREVVPV 418

Query: 440 GASRRKAVDIQVICATHRDLETLVAAGEFREDLYFRLGGARFQLPPLRERSDRLALINRI 499
           G+++   VDIQ+I ATH DLE+LVA G FR+DL++RL G + +LP LRER D   +I+++
Sbjct: 419 GSNQSVKVDIQIIAATHMDLESLVAQGLFRQDLFYRLNGLQVRLPALRERQDIERIIHKL 478

Query: 500 LAEESALCGATVQLSGAALECLLGYHWPGNVRQLRHVLRYACAVCE-ASVVQLSHLPESM 558
                +       L    L  L+ Y WPGN+R+L ++++ AC + E   V+  +HLPE +
Sbjct: 479 HRRHRS---GPQTLCTELLGQLMRYDWPGNLRELDNLMQVACLMAEDDEVLARAHLPEHL 535

Query: 559 ------------------------HHTDAADHGPEPSASPERQALLDALVRHRWKPTAAA 594
                                      D   H  +       Q +L A        +  A
Sbjct: 536 AKKLVNKPLAVYERQHVENPQNPRDKDDIGRHSADSLHGAINQNVLQAYRACEGNVSQCA 595

Query: 595 RALGISRATLYRRVNLHGIE 614
           + LGISR  LYR++   GI+
Sbjct: 596 KRLGISRNALYRKLKQLGIK 615