Pairwise Alignments
Query, 1213 a.a., Exonuclease SbcC from Pseudomonas fluorescens FW300-N2E2
Subject, 1043 a.a., Nuclease SbcCD subunit C from Enterobacter sp. TBS_079
Score = 259 bits (661), Expect = 1e-72
Identities = 297/1049 (28%), Positives = 474/1049 (45%), Gaps = 127/1049 (12%)
Query: 1 MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAVPR 60
MKIL++RLKNL SL G ++IDFTAEP AS GLFAITG TGAGK+TLLDA+CLAL+ PR
Sbjct: 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGATGAGKTTLLDAICLALYHETPR 60
Query: 61 LNNTGRDAKVPDVDGEIATGDPRTLLRRGTGDGYAEVDFRGIDGRRYRARWEANRAREKA 120
L KV ++ T D T + AEV+F + G YRA W NRAR +
Sbjct: 61 LQ------KVSQAQNDLMTRD--------TAECLAEVEFE-VKGIAYRAFWSQNRARNQP 105
Query: 121 GGKLQASRQSLRDLDNDQLLASQKGEYKTQLETALGLNFEQFTRAVLLAQSEFSAFLKAD 180
G LQA R L ++ ++LA + + Q GL++ +FTR++LL+Q +F+AFL A
Sbjct: 106 DGNLQAPRVELARCEDGKILADKVSDKLEQTAALTGLDYGRFTRSMLLSQGQFAAFLNAR 165
Query: 181 DNERSELLEKLTDTALYTRLGRRAFDKAKHAKETHKQLQDQATGVTPLAPEARAELDQRF 240
++R+ELLE+LT T +Y ++ F+K K A+ + + QA GV L+ E + +L Q
Sbjct: 166 PSDRAELLEELTGTEIYGQISAMVFEKHKAARNALEVYEAQAAGVVLLSEEQQQQLQQSL 225
Query: 241 TEAQLQLKAQQAQLKQLEQQHTWLRDLGLLQDEHASAAEQLQQAQADWNALADERLKLVR 300
+ K AQ + ++ WL L E A QQAQ AL + +L
Sbjct: 226 QALTDEEKTLLAQQQNQQKDFQWLTRNDELIREQQRVATLQQQAQ---QALTEAAPELAT 282
Query: 301 LE------QLAP----QRHQFIRQTELNRQLEPLTAQIQQLT--QQQIDLHAQQ--AELE 346
L+ QL P Q+ Q R + +++ + A++Q T + +I AQ+ A+L+
Sbjct: 283 LQLAHPAAQLRPLWDSQQEQTTRLGQTKQRIVEVNARLQAKTALRSRIRNTAQRSHAQLQ 342
Query: 347 KALDDAQQALASAR------QQSIDSAPLLRQAFGEQSTLARLA-QDANLSAERQEQAQQ 399
L Q L Q+ Q +++ +A L+ + A L + E +
Sbjct: 343 TDLTALAQWLTEHERYRQWGQEIAGWRAHFAQRNRDKTQIATLSTRIAELRQKLAEMPEN 402
Query: 400 ACTEGQRTIDTLLEQQRQVAERLQRIADALEQSTHLAPLSDAWNAYRDRLQQLMLIGNRL 459
A T + +EQQ Q QR+ + PL Q+L G L
Sbjct: 403 ALTLTADEVSVAMEQQAQSRTFRQRL---MSLQARYLPLQ----------QRLRQNGESL 449
Query: 460 NQGQAELATLEQSATRAAEELATRRQ---DLEVLYKEAGAEPQAVAEQIQLLGTLLQDNR 516
+ QAE L ++ T ++ + Q DLE L ++ E+I+ L+ R
Sbjct: 450 QKAQAEQVKLNETLTLRRQQYKEKNQHYLDLETLCRQ--------EEKIK----SLEAER 497
Query: 517 KQLRAFEDLTRLWASQQE--LDKRGAELEQRQQRALQERDRLVREGGEAKAE-LTIAEQT 573
QL+A + ++ + EL QQR RD+L +E K E L + Q
Sbjct: 498 AQLQAGQPCPLCGSTSHPAVTAYQALELSANQQR----RDQLAKEVAALKEEGLLVLGQV 553
Query: 574 LTVTRELLERQRLARSESVEQLRAQLQDEQPCPVCGSVEHPYHQPEALLENLGRFDETEE 633
+TR++ A++ S E+ Q ++ VC S+ + + E++ + +E
Sbjct: 554 NALTRQIQRETDDAQTLSQEE---QALTKEWQSVCASLNITLN----IQEDIAPWMNEQE 606
Query: 634 ANARKAVDLLNEKVIDLRTQYSGVIAQLKELKQQQEQLASQQQSLAPSLEAHPLSAQLLA 693
R+ L + + L+ Q + AQ +Q Q+QL + +Q+L +L L+
Sbjct: 607 QYERQLYQL--SQRLTLQQQLNEQDAQ---ARQYQQQLTATRQALETTLLTLSLNVPEEG 661
Query: 694 QDS---NKRDTWLAQQNSQLHQHISQDEQRQTALLTL---------QQDAARLAQQLRDA 741
++ N+R+T AQ + QH ++R TAL+ L + + R+
Sbjct: 662 TEAAWLNERETEFAQWQEKQTQH-GVMQERMTALMPLLDTLPATNDTETEPAIPDNWRET 720
Query: 742 ETASQQAAQQLSNQQQELARDRQRLDDELSHFSALLPADTLQALRTEPAATFMQLDQQIA 801
QL+ QQ+ + + +RL +HF+A L A AA LD++
Sbjct: 721 HDECVSLQSQLATLQQQESLESERLQHATTHFTAALTASCFADREAFLAAL---LDEETI 777
Query: 802 QRLEQLEQQRDELSEQLQRQQTLEKEQDRQQTRLQQLEAVRLQFSALSEQQQACQQQLTQ 861
+RLE +Q L QLQ+ L + ++Q Q L+ A + Q Q QQL Q
Sbjct: 778 RRLEHRKQ---TLENQLQQATALFAQANQQLQAHQTQRPEGLELDAPTLQLQL--QQLGQ 832
Query: 862 LLGEHTSAEQWQQQLDQRLEQTRDAEATANQQLQQLRNDLVQLAAELKARQEQARSLDLE 921
L E+T+ Q ++ Q+L+Q D N+Q QQ+ ++ AA L SL
Sbjct: 833 QLRENTT---HQGEIRQQLKQDSD-----NRQHQQVLMQHIEEAARLADDWSYLNSL--- 881
Query: 922 RQALAAGIAQWRTSHPELDDAALEALLGLDDQHVSQLRQRLLNSEKAIE--QARVLLTER 979
G + L+ L+ L +Q +++L R L K + + V+ T +
Sbjct: 882 -----IGSSTGDKFRKFAQGLTLDNLVWLANQQLNRLHGRYLLQRKVSDALELEVVDTWQ 936
Query: 980 EQRLQNHQAQHNGN--LLPEQLAEALTEL 1006
+++ + G L+ LA AL++L
Sbjct: 937 ADAVRDTRTLSGGESFLVSLALALALSDL 965
Score = 238 bits (607), Expect = 2e-66
Identities = 270/934 (28%), Positives = 410/934 (43%), Gaps = 112/934 (11%)
Query: 315 TELNRQLEPLTAQIQQLTQQQIDLHAQQAELEKALDDAQQALASARQQSI--DSAPLLRQ 372
TE+ Q+ + + + + ++++ QA L + QQ Q++ + LL Q
Sbjct: 179 TEIYGQISAMVFEKHKAARNALEVYEAQAAGVVLLSEEQQQQLQQSLQALTDEEKTLLAQ 238
Query: 373 AFGEQSTLARLAQDANLSAERQ------EQAQQACTEGQRTIDTLLEQQRQVAERLQRIA 426
+Q L ++ L E+Q +QAQQA TE + TL Q A +L+ +
Sbjct: 239 QQNQQKDFQWLTRNDELIREQQRVATLQQQAQQALTEAAPELATL--QLAHPAAQLRPLW 296
Query: 427 DAL-EQSTHLAPLSDAWNAYRDRLQQLMLIGNRL-NQGQAELATLEQSATRAAEELATRR 484
D+ EQ+T L RLQ + +R+ N Q A L+ T A+ L
Sbjct: 297 DSQQEQTTRLGQTKQRIVEVNARLQAKTALRSRIRNTAQRSHAQLQTDLTALAQWLTEHE 356
Query: 485 QDLEVLYKEAGAEPQAVAEQIQLLGTLLQDNRKQLRAFEDLTRLWASQQELDKRGAELEQ 544
+ Y++ G E Q NR D T++ L R AEL
Sbjct: 357 R-----YRQWGQEIAGWRAHFA------QRNR-------DKTQI----ATLSTRIAEL-- 392
Query: 545 RQQRALQERDRLVREGGEAKAELTIAEQTLTVTRELLERQR--LARSESVEQLRAQLQDE 602
RQ+ A + L E + Q+ T + L+ Q L + + Q LQ
Sbjct: 393 RQKLAEMPENALTLTADEVSVAMEQQAQSRTFRQRLMSLQARYLPLQQRLRQNGESLQKA 452
Query: 603 QPCPVCGSVEHPYHQPEALLENLGRFDETEEANARKAVDLLNEKVIDLRTQYSGVIAQLK 662
Q V + +ET R+ N+ +DL T ++K
Sbjct: 453 QAEQV-------------------KLNETLTLR-RQQYKEKNQHYLDLETLCRQE-EKIK 491
Query: 663 ELKQQQEQLASQQQSLAPSLEAHPL--SAQLLAQDSNKRDTWLAQQNSQLHQHISQDEQR 720
L+ ++ QL + Q +HP + Q L +N+ Q+ QL + ++ +
Sbjct: 492 SLEAERAQLQAGQPCPLCGSTSHPAVTAYQALELSANQ------QRRDQLAKEVAA--LK 543
Query: 721 QTALLTLQQDAARLAQQLRDAETASQQAAQQLSNQQQELARDRQRLDDELSHFSALLPAD 780
+ LL L Q A Q R+ + A Q LS ++Q L ++ Q + L+
Sbjct: 544 EEGLLVLGQVNALTRQIQRETDDA-----QTLSQEEQALTKEWQSVCASLNI-------- 590
Query: 781 TLQALRTEPAATFMQLDQQIAQRLEQLEQQRDELSEQLQRQQTLEKEQDRQQTRLQQLEA 840
TL E A +M +Q ++L QL Q R L +QL Q ++ +Q T +Q
Sbjct: 591 TLNI--QEDIAPWMNEQEQYERQLYQLSQ-RLTLQQQLNEQDAQARQYQQQLTATRQALE 647
Query: 841 VRLQFSALSEQQQACQQQLTQLLGEHTSAEQWQQQLDQR----------------LEQTR 884
L +L+ ++ + L T QWQ++ Q L T
Sbjct: 648 TTLLTLSLNVPEEGTEA--AWLNERETEFAQWQEKQTQHGVMQERMTALMPLLDTLPATN 705
Query: 885 DAEA--TANQQLQQLRNDLVQLAAELKARQEQARSLDLER-QALAAGIAQWRTSHPELDD 941
D E ++ ++ V L ++L Q+Q SL+ ER Q T+ D
Sbjct: 706 DTETEPAIPDNWRETHDECVSLQSQLATLQQQ-ESLESERLQHATTHFTAALTASCFADR 764
Query: 942 AALEALLGLDDQHVSQLRQRLLNSEKAIEQARVLLTEREQRLQNHQAQHNGNLLPEQ--L 999
A A L LD++ + +L R E ++QA L + Q+LQ HQ Q L + L
Sbjct: 765 EAFLAAL-LDEETIRRLEHRKQTLENQLQQATALFAQANQQLQAHQTQRPEGLELDAPTL 823
Query: 1000 AEALTELQGQFAASEQRCAELRAEQAEDQRRQNANQALAQQIEQAYIEYQRWARLDALIG 1059
L +L Q + E+R + +D + Q L Q IE+A W+ L++LIG
Sbjct: 824 QLQLQQLGQQLRENTTHQGEIRQQLKQDSDNRQHQQVLMQHIEEAARLADDWSYLNSLIG 883
Query: 1060 SATGDRFRKLAQAYNLDLLVHHANAQLRQLVRRYRLKRGGS-MLGLLVMDTEMGDELRSV 1118
S+TGD+FRK AQ LD LV AN QL +L RY L+R S L L V+DT D +R
Sbjct: 884 SSTGDKFRKFAQGLTLDNLVWLANQQLNRLHGRYLLQRKVSDALELEVVDTWQADAVRDT 943
Query: 1119 HSLSGGETFLVSLALALGLASMASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQG 1178
+LSGGE+FLVSLALAL L+ + S +I+SLF+DEGFG+LD E+L A+DALD L A G
Sbjct: 944 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNATG 1003
Query: 1179 RKVAVISHVQEMHERIPVQIQVRR-QGNGLSTVE 1211
+ + VISHV+ M ERIPVQI+V++ G G S ++
Sbjct: 1004 KTIGVISHVEAMKERIPVQIKVKKINGLGYSKLD 1037