Pairwise Alignments

Query, 309 a.a., FIG014801: Cation ABC transporter, periplasmic cation-binding protein from Pseudomonas fluorescens FW300-N2E2

Subject, 296 a.a., periplasmic solute binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  102 bits (253), Expect = 1e-26
 Identities = 67/262 (25%), Positives = 122/262 (46%), Gaps = 6/262 (2%)

Query: 11  LRLLLIGLLACLFTSPVSAETAKRLRIGITLHPYYSYVTNIVGDKAEVVPLIPAGFNPHA 70
           +RLL    LA     P  A  A++L+   T         N+ GD AEVV +   G   H 
Sbjct: 1   MRLLSGVTLAAALALPSLAH-AEKLKAVTTFTVIADMAQNVAGDAAEVVSITKPGAEIHG 59

Query: 71  YEPRAEDIKRISGLDVIVLNGVGHDDFADRMIAASETPNVKVIEANENVPLLAATGTAAR 130
           Y+P   D+ +    D+I+ NG+  + + ++ +  S   +V  +   + +  ++    +  
Sbjct: 60  YQPTPRDLLKAQDADLILWNGLNLELWFEQFL--SNLRDVPAVTLTDGIDPVSIGSGSYE 117

Query: 131 GAGKVVNPHTFLSISASIAQVNNIARELGKLDPDNAKAYTQNARAYGKRLRQMRAAALAK 190
           G     NPH ++S+  ++  V+NIA    + DPDNA+ Y  NA AY   +    A     
Sbjct: 118 GKP---NPHAWMSLDNALVYVDNIAAAFAEHDPDNAETYLANAEAYKAEITATIAPLREM 174

Query: 191 LTQAPNAELRVATVHAAYDYLLREFGLEVTAVVEPAHGIEPSPSQLKKTIDQLRELDVKV 250
           +   P ++  + +   A+ YL R+FG++   +         +P Q++K ID +R  ++ V
Sbjct: 175 VQAVPASQRWLVSCEGAFSYLARDFGMQELYLWPMNADQTGTPQQVRKVIDGVRANEIPV 234

Query: 251 IFSEMDFPSTYVDTIQRESGVK 272
           +F E    +   + + RE+G +
Sbjct: 235 VFCESTVNNDPAEQVARETGAR 256