Pairwise Alignments

Query, 328 a.a., DNA polymerase III delta prime subunit (EC 2.7.7.7) from Pseudomonas fluorescens FW300-N2E2

Subject, 341 a.a., DNA polymerase III, delta'' subunit from Dechlorosoma suillum PS

 Score =  162 bits (409), Expect = 1e-44
 Identities = 126/346 (36%), Positives = 173/346 (50%), Gaps = 41/346 (11%)

Query: 8   QDGLWQQLAGR-AQHAHAYLLHGPAGIGKRALAERLMASLLCQRPGVS-NACGECKSCLL 65
           Q+  WQ+L GR AQ  HA LL G  G+GK  LA    A LLC+ PG+  +ACG+C +C  
Sbjct: 7   QESAWQRLQGRRAQLPHALLLIGQRGVGKFELARAFAAGLLCEAPGMDGHACGQCSACNW 66

Query: 66  LKAGSHPDNYVLEP-----EEAD-----------KAIKVDQVRDLVSFVVQTSQMGGRKV 109
           L  G+HPD  +++P     EEA+           + I +DQVR L  F+   +   G ++
Sbjct: 67  LGQGNHPDFRLVQPAAMSDEEAEADEETGKKKPSQQITIDQVRGLDDFLHVGTHRQGVRI 126

Query: 110 VLIEPVESMNINAANALLKSLEEPSGDTVLLLVSHQPSRLLPTIKSRCVQQACPLPSEAM 169
           VL+ P E+MN N ANALLKSLEEP  DT+ LLVS +  RLLPTI+SRC     PLPS   
Sbjct: 127 VLLHPAEAMNRNTANALLKSLEEPRPDTLFLLVSSEADRLLPTIRSRCQTVEVPLPSPQA 186

Query: 170 SLQWL-AQALPDSSDEERVELLTLAAGSPLGAVSLQAQGVREQRALVVDGVKKLLKQQQ- 227
           +  WL AQ + D         L LA G+P  A  L   G   QR+L+   + +L K +Q 
Sbjct: 187 ATAWLAAQKVSDGG-----RWLALAGGAPRLAAELAGSG---QRSLLDALLGQLQKGRQL 238

Query: 228 ---------SPTQLAEGWNAIPLLLLFDWFCDWSSLILRYQLTEDEAGLGLADMRKVIQY 278
                      T  A+   A+ +    +W   WS+ +    + E        D    I  
Sbjct: 239 DPIAAAALIEKTLKADKSGALTMKRTVEWLQKWSADLA--LVAEGLPPRYFQDDGATIGQ 296

Query: 279 LAQKSSQDKILNIQDWILAQRQKVLGKANLNRVLLLEALLVQWASL 324
           LA  SS  KI+N    ++  + K   +  LN  L+LE L   + +L
Sbjct: 297 LAASSSTIKIINFNRLLI--KFKAQSEHPLNLRLVLEELFFAYRAL 340