Pairwise Alignments

Query, 322 a.a., Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) from Pseudomonas fluorescens FW300-N2E2

Subject, 330 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  175 bits (444), Expect = 1e-48
 Identities = 115/312 (36%), Positives = 167/312 (53%), Gaps = 8/312 (2%)

Query: 15  VQLLEVSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVR 74
           V+ + V+ +  G R+D +   R   +    + ++LR G++RV+  R+K   +L+AG  VR
Sbjct: 3   VETVAVTQDEDGSRLDRWFKRRYPALTHGRLEKLLRTGQIRVDGKRVKSGERLEAGQQVR 62

Query: 75  VPPV--RVPERDE-----PVPLAQGLLQRLEASIIYEDKALIVINKPAGIAVHGGSGLNF 127
           VPP+    P         P P A+G ++ L  +I++ED  LIVINK AG+AV GG+G   
Sbjct: 63  VPPLGDEAPSPSSSGHAVPRPAAEGEIRALRRAILHEDAHLIVINKEAGLAVQGGTGTPH 122

Query: 128 GVIEAFRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHEQLRGDGVDKRYMALVR 187
            +      L    +   LVHRLD+DTSG+L++A+ ++  R L    R     K Y A+V 
Sbjct: 123 HLDGMLESLADGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFRSREALKVYWAIVV 182

Query: 188 GRWETSIKQVRAPLLKSNLRSGERMVEVNEEGKEALTVFKVLRRFDDFATLVEAKPVTGR 247
           GR       ++  L K     GERM    EEGK A+T F+V+ +       VE  P TGR
Sbjct: 183 GRPPMLQGTIKGALAKVAGGRGERMEINEEEGKRAVTDFRVVDQAAKACAWVELHPRTGR 242

Query: 248 THQIRVHTLHAGHCIAGDSKYGDDDFTKEIRDLGGKRLFLHAYMLTVPLPDGGELKLQAP 307
           THQ+RVH L  G  I GD KYG      E  +L  KR+ LHA  L +P P GG L++ AP
Sbjct: 243 THQLRVHCLEMGTPILGDGKYGGPGAFLEGTEL-PKRMHLHARALALPHPAGGVLEIIAP 301

Query: 308 VDDMWAKTVERL 319
               + ++++ L
Sbjct: 302 PPPHFVESLKTL 313