Pairwise Alignments

Query, 304 a.a., Membrane protein, putative from Pseudomonas fluorescens FW300-N2E2

Subject, 307 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  350 bits (898), Expect = e-101
 Identities = 181/312 (58%), Positives = 234/312 (75%), Gaps = 21/312 (6%)

Query: 1   MAGSSLLVLIDDIATVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAERELPVVWA 60
           MAG+SLL L+DDIA +LDDVALM+K+AA+KTAGVLGDDLALNAQQVSGV A+RELPVVWA
Sbjct: 1   MAGASLLTLLDDIAAILDDVALMSKVAARKTAGVLGDDLALNAQQVSGVNADRELPVVWA 60

Query: 61  VAKGSFINKLILVPSALAISAFVPWLVTPLLMVGGAYLCFEGFEKLAHKFL--HSPAEEQ 118
           VAKGS  NK ILVP+AL ISAF+PW VTPLLM GG +LC+EGFEK+ H     H PA  Q
Sbjct: 61  VAKGSLRNKCILVPAALLISAFIPWAVTPLLMFGGLFLCYEGFEKVYHSLTHKHEPAMSQ 120

Query: 119 AEHAQLVEAVADPAVDLVAFEKDKIKGAVRTDFILSAEIIAITLGTVADAALTQQVIVLS 178
           +E A+  E       DL AFEK K+ GA+RTDF+LSAEIIAITLG VA+++   QV+ L+
Sbjct: 121 SEMAKAAE-------DLKAFEKQKVAGAIRTDFVLSAEIIAITLGVVAESSFMTQVVTLA 173

Query: 179 GIAIVMTIGVYGLVAGIVKLDDLGLWLTQKPG-----QAAKSIGGAILSAAPYMMKSLSV 233
            IA++MT+GVYGLVAGIVKLDD GL+L+Q+ G     +  + +GG +++AAPY+M+ L+V
Sbjct: 174 IIAVLMTVGVYGLVAGIVKLDDAGLYLSQRQGDGLLRRLGRKLGGGLVNAAPYLMRGLTV 233

Query: 234 IGTAAMFLVGGGILTHGVPVV-------HHWIEGVTASAGGAGFIVPMLLNAVAGIVAGA 286
           +GT AMF+VGGGILTHG+  +        HW+ G+T       ++ P LLNA+ G++ GA
Sbjct: 234 VGTIAMFMVGGGILTHGIHQIAEVFEQAAHWVAGLTIVGPVLAWMTPSLLNALFGVLVGA 293

Query: 287 AVLAGVMVVGKV 298
             L  + ++G++
Sbjct: 294 VALVVMSLIGRL 305