Pairwise Alignments

Query, 304 a.a., Membrane protein, putative from Pseudomonas fluorescens FW300-N2E2

Subject, 308 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  345 bits (885), Expect = e-100
 Identities = 180/301 (59%), Positives = 228/301 (75%), Gaps = 16/301 (5%)

Query: 1   MAGSSLLVLIDDIATVLDDVALMTKMAAKKTAGVLGDDLALNAQQVSGVRAERELPVVWA 60
           MAG+SLL L+DDIA++LDDVALM+K+AAKKTAGVLGDDLALNAQQV+GV A+RELPVVWA
Sbjct: 1   MAGASLLTLLDDIASILDDVALMSKVAAKKTAGVLGDDLALNAQQVTGVSADRELPVVWA 60

Query: 61  VAKGSFINKLILVPSALAISAFVPWLVTPLLMVGGAYLCFEGFEKLAHKFLHSPAEEQAE 120
           VA GSF NKLILVP+A+ ISAF+PW VTPLLM GG +LCFEGFEKL H + H     + +
Sbjct: 61  VALGSFRNKLILVPAAMLISAFIPWAVTPLLMFGGLFLCFEGFEKLHHSYSH----RKDK 116

Query: 121 HAQLVEAVADPAVDLVAFEKDKIKGAVRTDFILSAEIIAITLGTVADAALTQQVIVLSGI 180
           H++  E       DL A+EK+K++GA+RTDF+LSAEIIAITLG VAD +L+ Q   L+ I
Sbjct: 117 HSEQAEPDVADISDLAAYEKEKVQGAIRTDFVLSAEIIAITLGIVADKSLSTQFFTLAVI 176

Query: 181 AIVMTIGVYGLVAGIVKLDDLGLWLTQKPGQAA-----KSIGGAILSAAPYMMKSLSVIG 235
            IVMT+GVYGLVA IVK+DD GL+L+Q+ G+++     + +G  +LSAAP +MKSL++IG
Sbjct: 177 GIVMTVGVYGLVAAIVKMDDAGLYLSQRQGESSFTRFNRKVGFGLLSAAPLLMKSLTIIG 236

Query: 236 TAAMFLVGGGILTHGV----PVVHH---WIEGVTASAGGAGFIVPMLLNAVAGIVAGAAV 288
           TAAMF+VGGGILTHG+      +HH   W+  +       G + P +LNA  GI AGA  
Sbjct: 237 TAAMFMVGGGILTHGLHWVSEQIHHAEQWVSAIAVVGPVLGLLTPSVLNAFFGIAAGAVA 296

Query: 289 L 289
           +
Sbjct: 297 V 297