Pairwise Alignments

Query, 497 a.a., DNA recombination protein RmuC from Pseudomonas fluorescens FW300-N2E2

Subject, 409 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 74.7 bits (182), Expect = 6e-18
 Identities = 95/398 (23%), Positives = 166/398 (41%), Gaps = 52/398 (13%)

Query: 117 AQAASLHAELREQQESHQQRLDDLQGSRDELRAQFAELAGK-------IFDEREQRFAET 169
           AQA  L A LR+Q    Q+  ++L  S  ELR +  +   +       +  +      E 
Sbjct: 28  AQAEQLQAALRQQM---QENREELNRSIRELRMEMTQTLNQNMQQLQDVLHKNMMTNGEL 84

Query: 170 SQQRLGQLLDPLKERIQSFEKR-------VEESYQAEARERFSLGKELERLQQLNLR--- 219
            +Q+   +    +  I+S EKR       VEE  Q    ER     E+ R Q  N++   
Sbjct: 85  QRQKFDTMARQQEVLIKSTEKRLDDMRLMVEEKLQKTLNERIGQSFEIVRSQLENVQKGL 144

Query: 220 -----LSDEATNLTRALKGQKTQGNWGELILERVLEHAGLEKGREYQTQVSLKGPDGERF 274
                L+ +   L + L   K +G +GE+ L  +LE   +    +Y   V  K   G  F
Sbjct: 145 GEMKSLAQDVGGLKKVLSNVKMRGTFGEVQLGALLEQ--MMSPEQYDANVKTK-KSGTEF 201

Query: 275 QPDVLIYLPGDKQ------VVVDSKVSLTAYQQYV---AAEDDAIGQHALKQHVASLRAH 325
             +  I LPG         + +D+K     Y+QY     A D A+ + + KQ   +++  
Sbjct: 202 V-EFAIKLPGKDDANSTVYLPIDAKFPKDVYEQYYDAFEAGDTALMESSGKQLETTIKKM 260

Query: 326 VKGLAGKDYKRLDGLHSLDFVLLFVPIEAAFSAALQAEPNLFQEAFDRNIVIVSPTTLLA 385
            K +  K    +D   + DF ++F+P E+ ++  ++    +     +  IV+  PTTL A
Sbjct: 261 AKDIHDK---YVDPPFTTDFAIMFLPFESIYAEVIRRTSLVETLQKEYKIVVTGPTTLGA 317

Query: 386 TLRVIDSLWKQERQSQNAREIAERAGWLYDKFVLFIQDLDEIGSRLQQLDKAYSAARNKL 445
            L  +       +       I +R G ++        +  + G  L+++ K   +A ++L
Sbjct: 318 ILNSL-------QMGFRTLAIQKRTGEVWTVLGAVKTEFSKFGGLLEKVQKNLQSAGDQL 370

Query: 446 TEGRGNLISRSEQLKLLGARASKSLPADLLERAMTDAD 483
            E  G   +R+ + KL   R  + LP +  +R +  AD
Sbjct: 371 EEVMGKR-TRAIERKL---RQVEQLPHEESQRILPIAD 404