Pairwise Alignments

Query, 456 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 from Pseudomonas fluorescens FW300-N2E2

Subject, 444 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Xanthomonas campestris pv. campestris strain 8004

 Score =  314 bits (805), Expect = 3e-90
 Identities = 179/426 (42%), Positives = 251/426 (58%), Gaps = 8/426 (1%)

Query: 31  IERLANDGRGIAFIEG---RTWFVIGALAGEEVEARVLGAHGKVVEARTERVFLPSELRR 87
           I  L++DGRG+A  +G   +  F+ GAL GE V A          EA+T  V   S  R 
Sbjct: 17  ITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTARSRHFDEAKTVEVLQASPQRV 76

Query: 88  AAPCVHAGRCGGCSVQHLPHDEQLALKQRMLAEQLSRVAGVVPEEWAAPLSGPEFGYRRR 147
           A  C H G C GC +QHL   +Q+  KQR+L + L R+  V P+     L G  +GYRR+
Sbjct: 77  APRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRK 136

Query: 148 ARVAVRWDQKAKKLEVGFRAVGSQDIVAIGDCPVLVQPLQPIMSRLPEMLRRLSKPQALG 207
            R +VR  +K  K  VGFR +  + +  +  C  ++  +   + +L  ++  +   + + 
Sbjct: 137 GRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMDGKRDIP 196

Query: 208 HVELFAGSSRAVL-LRHMAPLSEADLTILKDFCAFHEAQLWLH--GEGEPQPVEPGQA-L 263
            +E  AG     L +RH+ PLS  D   L +F   H+  ++L   G     P+ P +  L
Sbjct: 197 QIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVPL 256

Query: 264 GFRLDAWDLELAYRPGDFIQVNAGVNEAMIAQALQWLAPRAEERVLDLFCGLGNFALPLA 323
            FRL  WD+ELA+RP DFIQVNA +N+ MIA AL  L  + ++RVLDLFCGLGNF LPLA
Sbjct: 257 SFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLA 316

Query: 324 QSVRQVVAVEGVQTMVDRAAANAVSNNLNNTAFFQADLSQPLADAEWIGEGFSAVLLDPP 383
           ++VR+VV VEG   +V RA  NA  N L+N  F+ ADL+Q      W+ +GF  +LLDPP
Sbjct: 317 RTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQTAWMRQGFDKLLLDPP 376

Query: 384 RDGAFEVVRKLSSLGAKRLVYVSCNPATLARDTVELI-KQGYRLKRAGILDMFPQTAHVE 442
           R GA +V+++L     KR+VYVSC+P +LARD   L+ +QG+ L  AG +DMFP TAHVE
Sbjct: 377 RSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHTAHVE 436

Query: 443 AMALFE 448
           ++A+FE
Sbjct: 437 SIAVFE 442