Pairwise Alignments

Query, 332 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N2E2

Subject, 349 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  145 bits (366), Expect = 1e-39
 Identities = 106/329 (32%), Positives = 161/329 (48%), Gaps = 6/329 (1%)

Query: 4   RTIASHFARAALGGARRQGFDYVPVLQQLGISPELLDEPRARIAPEQFARLLQALWLALG 63
           RT +S +A+  +      G D   +  +LG+    L++P AR A +   RL Q      G
Sbjct: 16  RTTSSSWAQGIVQSLESAGVDCRQLFGELGLDYSALNDPDARFAQDDMTRLWQRAVAVSG 75

Query: 64  DEYLGFGRAAS-KPGTFAMMCHALIHCRTLGKALQRGLLFYSLFPDAPSLTLE--AEGER 120
           +  +G   A   +P    ++ +AL+    L +   R + +  +  +   L  +  AEG R
Sbjct: 76  NPAIGLDMARQVRPAALNVVGYALMSSCNLKEGFARLVRYQRIIAEGADLDFQPCAEGYR 135

Query: 121 VRLVLDDSTLWDPDHFLTESLLVVWHRLASWLIGQRIGLEQATFGYTKPAHGAEYDLLFS 180
           + L +    L  P     E  L        WL G  +   + +F    P     Y  LF 
Sbjct: 136 LSLTILGDRL-PPARQSAEGSLAGCLTFCRWLSGTMLRPLEVSFQGPPPDDLEPYRQLFQ 194

Query: 181 CPLVFEARSSSLLFHSRYLGMPLLQDERTLKHFLERSPADLLSRPDDGHSLSSQLRRLLS 240
            PL FEA+  +LLF    + MPL      L    +R   + LSR  D   L  + R++L 
Sbjct: 195 APLRFEAQRYALLFRQADVEMPLPTANEALAQLHDRFAGEYLSRFADTRVLH-RTRQILC 253

Query: 241 RDTARW-PDLDTVAGHLHISPQTLRRHLREEGTSFQELKDQLRRDIAIYHLGRADLSLQQ 299
           R   +  P  + VA  L +S +TL+R L+EEG++FQ+L D  RRD+A+ HL + DL+  +
Sbjct: 254 RLLPQGEPRREIVAQALCLSERTLQRRLQEEGSTFQQLLDDTRRDLAVQHLAQPDLAPLE 313

Query: 300 IAEQLGFSEPSAFHRAFKKWTGLTPGAYR 328
           IA  LGF++PS F+RAFK+W G+TPG YR
Sbjct: 314 IAYLLGFADPSNFYRAFKRWFGMTPGEYR 342