Pairwise Alignments

Query, 441 a.a., Flagellar hook protein FlgE from Pseudomonas fluorescens FW300-N2E2

Subject, 453 a.a., flagellar hook protein FlgE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  273 bits (699), Expect = 6e-78
 Identities = 175/462 (37%), Positives = 251/462 (54%), Gaps = 32/462 (6%)

Query: 1   MSFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFEDVYSATKLGSGSKTVGNGVR 60
           MSFNI LSG+ AA K L+ T NNIAN  T GFK SRAEF DVY+ +   +    VG GV 
Sbjct: 1   MSFNIALSGISAAQKDLNTTANNIANANTIGFKESRAEFADVYANSIFSNSKTAVGGGVA 60

Query: 61  LANVSQQFGQGDVNNTGNVLDMGIQGQGFFVLSND-GSLS--YTRAGTFKTDKEGFITNS 117
            + V+QQF QG +  T N LD+ I+G GFFV +++ G+L   +TRAG FK DK  ++ +S
Sbjct: 61  TSQVAQQFHQGSLQLTNNSLDLAIKGGGFFVTASEIGTLDHQFTRAGAFKVDKNNYMVDS 120

Query: 118 DGTARLQGYGVDANGKIQNGILTDLRI----DTSNLPPQATSLVSSTINLNSTATPIT-V 172
            G   LQ + VD +G   +  LT  +     DT+  P Q T  V+  +NLN+    +   
Sbjct: 121 AGNF-LQTFPVDKDGNSTSVSLTTAKPVQIPDTAGSPVQ-TENVTLQMNLNAKEGSLDPA 178

Query: 173 AFNPTDTATFTKQFTTPVYDTQGNQHSMDQYMVK------TAGNTWNVYTLIDGRNLNGS 226
           AF+P D+ T+    +  +YD+ G  H M  Y VK         N W  Y  IDG+ ++ S
Sbjct: 179 AFDPLDSKTYNSVTSMTIYDSLGEPHIMTTYFVKPNNGSYNGENNWVAYYAIDGKQVDVS 238

Query: 227 APVAPNAPVPSTMTFDSNGRLTQVSTPVPPTVPPTVPTPAPTISNDLNLVGWVPGTVTNG 286
            P         T   D+NG  T  +T    T      +     S  +   G  P  VT  
Sbjct: 239 GPAG-------TYQTDTNGDGTPDATGTAQTTGGWKGSVLKFNSVGV-YTGSDPAVVTTE 290

Query: 287 TWTANGAG--------SSTITISMANTTQFNADTARSIPAQNGYATGQITNLTIDGSGVL 338
                GAG        +  + I     TQ++A  A +  +Q+G   G++TN+ I   G++
Sbjct: 291 ALGVGGAGVLGPGADGTQAVNIKFNAPTQYSAPFAATELSQDGTTVGRLTNVEIGEDGLI 350

Query: 339 LANFSNNQTKPIGQLALASFTNEQGLQPVGGTSWKETFASGIPGYDAPETGTLGSIVSNS 398
            A++SN  T P+ ++AL  F NEQGL  VG TSWK + +SG      P +GT GS+ S++
Sbjct: 351 TASYSNGSTVPLARVALVRFANEQGLTQVGNTSWKASLSSGPALAGEPNSGTFGSLSSSA 410

Query: 399 LEESNVNLTNELVELIKAQSNYQANAKTISTQSTIMQTIIQM 440
           LE+SN++LT ELV+LI AQ N+QAN++T+   +T+ QT++Q+
Sbjct: 411 LEQSNIDLTTELVDLISAQRNFQANSRTLEVNNTLQQTVLQI 452