Pairwise Alignments

Query, 240 a.a., Flagellar basal-body rod modification protein FlgD from Pseudomonas fluorescens FW300-N2E2

Subject, 253 a.a., basal-body rod modification protein FlgD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  130 bits (326), Expect = 3e-35
 Identities = 78/229 (34%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 18  NSSVKTNNTS----DTLGAVTGAATGK---KELGKDAFLQLLVTQLKNQNPLEPQDNGEF 70
           N+   TN+T     D L   + +A  +   ++L ++ F  LL  QL  Q+P +P DN + 
Sbjct: 22  NTKTSTNSTGNPFLDGLRLPSNSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDNDQM 81

Query: 71  VAQLAQFSSLEGITTLNETVSGIAGNYNSSQALQASSLVGRSVIAPGDKAVVDT-SKSLN 129
           +AQ+A FS+++GI+ LN+ +  +     SSQALQAS LVGR V+ P D   +   S  LN
Sbjct: 82  IAQMASFSTVDGISKLNDQIVNLNSVMTSSQALQASGLVGRKVLLPTDTGYISAESPGLN 141

Query: 130 GTVVVPTSVSSVAVKIVDKDGKTVRTIDLGSQNAGNSAFIWDGKNDAGTVVESGTYTFAA 189
           G +     +  + ++I D+ G+ VRT  +     GN+   WDG ND G  V +G Y+  A
Sbjct: 142 GVISTSEKIPVINIRIEDEKGQVVRTFTVDGSKGGNTDVKWDGLNDKGEPVAAGNYSIKA 201

Query: 190 STTIDGKATSLITNLPATVSSVTISQTGGELMLNLAGLGSIALSKVQTI 238
           S  ++ K+ +L  +    V+SV++       +LNL G  +  LS V  I
Sbjct: 202 SGLVNDKSQALAVSTYGHVTSVSLGTAATGAILNLKGGMAFKLSDVLAI 250