Pairwise Alignments

Query, 227 a.a., DNA-binding response regulator ColR from Pseudomonas fluorescens FW300-N2E2

Subject, 225 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (486), Expect = 8e-54
 Identities = 102/222 (45%), Positives = 141/222 (63%), Gaps = 3/222 (1%)

Query: 1   MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60
           M +LLVEDNR +  N+  YL L G   D A +      L + + +D I+LD+ LP  DG 
Sbjct: 1   MLVLLVEDNRLLSNNIIQYLELSGIECDYAFNLAQAEMLISQQQFDAIILDLNLPDGDGI 60

Query: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRA 120
             C+R +      +P+IMLTAR  L++RL GF  GADDYLIKPFA+ EL AR++ V +R 
Sbjct: 61  EACERWKAQCF-SSPIIMLTARSSLNERLAGFAVGADDYLIKPFAMEELVARLKVVAQRR 119

Query: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180
               R  L +GDL  D     V R+G+LL L+  G +++A+L ++SP  + RE +E  LW
Sbjct: 120 PAPQR--LTIGDLEIDFANHMVYRQGQLLALSKTGWQIMALLARRSPETVSREEIERMLW 177

Query: 181 GDDCPDSDSLRSHVHQLRQVIDKPFDKPLLHTVHGVGYRLAE 222
            D  PDSDSLRSH+H LR+VID+PF++ +LHT+ GVG  L +
Sbjct: 178 PDSAPDSDSLRSHIHLLRRVIDRPFERQILHTIRGVGLSLRD 219