Pairwise Alignments

Query, 190 a.a., Electron transport complex protein RnfA from Pseudomonas fluorescens FW300-N2E2

Subject, 192 a.a., Na(+)-translocating NADH-quinone reductase subunit E (RefSeq) from Shewanella loihica PV-4

 Score =  107 bits (267), Expect = 1e-28
 Identities = 66/192 (34%), Positives = 104/192 (54%), Gaps = 5/192 (2%)

Query: 1   MTEIVLTLFSAALINNLVLHWPLGVDPLLAANGR-KQVHALGLATACLMLIVGTLGYLID 59
           M+E +L L    L+NN VL   LG+ P +  + + +    + +AT  ++ +   L YL+D
Sbjct: 1   MSEYLLLLVGTVLVNNFVLVKFLGLCPFMGVSSKLESAIGMSMATTFVLTLASILSYLVD 60

Query: 60  HYLLAPSNLVSLRLLAWLSLSVLLIGPLLRLLARWRPAMSFEGLW---PLLLGNAGILGV 116
            YLL P +L  LR +A++ L + ++     +L +   A     L    PL+  N  +LGV
Sbjct: 61  TYLLTPFDLSYLRTMAFI-LVIAVVVQFTEMLVQKTSAALHRALGIYLPLITTNCAVLGV 119

Query: 117 TLLNGQDDRGLGHAIALSLGAGLGFWLVLGLFDDLRQRTFNNDIPLPFRGLPIQLISAGL 176
            LLN  +      +     GA +GF +VL LF  +R+R    D+P PF+G  I +I+AGL
Sbjct: 120 ALLNVNEKHDFIESAIYGFGAAVGFSIVLILFSAMRERLAAADVPAPFKGGAIAMITAGL 179

Query: 177 MAVAFLGLRGLV 188
           M++AF+G  GLV
Sbjct: 180 MSLAFMGFTGLV 191