Pairwise Alignments

Query, 190 a.a., Electron transport complex protein RnfA from Pseudomonas fluorescens FW300-N2E2

Subject, 202 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 66.6 bits (161), Expect = 3e-16
 Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 15/201 (7%)

Query: 1   MTEIVLTLFSAALINNLVLHWPLGVDPLLAANGRKQVHALGLATACLMLIVGTL--GYLI 58
           M   +  L  +  I N+ L + LG+   LA + +K   A+GL  A ++++  ++    +I
Sbjct: 1   MEHYISLLIRSVFIENMALAFFLGMCTFLAVS-KKVTTAMGLGIAVVVVLTISVPANQVI 59

Query: 59  DHYLLAP----------SNLVSLRLLAWLSLSVLLIGPLLRLLARWRPAM-SFEGLW-PL 106
              LLAP          ++L  L+ + ++ +   L+  L   L ++ P + +  G++ PL
Sbjct: 60  YQGLLAPGALAWAGAPEADLSFLKFITFIGVIAALVQILEMALDKYFPPLYNALGIFLPL 119

Query: 107 LLGNAGILGVTLLNGQDDRGLGHAIALSLGAGLGFWLVLGLFDDLRQRTFNNDIPLPFRG 166
           +  N  I G      + D  LG ++    G+G+G+ L + L   +R++    D+P   RG
Sbjct: 120 ITVNCAIFGAVSFMVERDYKLGESLVFGFGSGVGWALAIVLMAGIREKLKYADVPNGLRG 179

Query: 167 LPIQLISAGLMAVAFLGLRGL 187
           L I  I+AGLMA+ F+   G+
Sbjct: 180 LGITFITAGLMALGFMSFSGV 200