Pairwise Alignments

Query, 190 a.a., Electron transport complex protein RnfA from Pseudomonas fluorescens FW300-N2E2

Subject, 202 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.4 bits (150), Expect = 5e-15
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 13/200 (6%)

Query: 1   MTEIVLTLFSAALINNLVLHWPLGVDPLLAANGR-KQVHALGLATACLMLIVGTLGYLID 59
           M   +     A  ++N+ L + LG+   LA + +      LG+A   +M +   L  LI 
Sbjct: 1   MEHYINLFIQATFLDNMALSFFLGMCTFLAVSKKVSTAFGLGVAVIVVMTLAVPLNQLIY 60

Query: 60  HYLLAPS----------NLVSLRLLAWLSLSVLLIGPLLRLLARWRPAM--SFEGLWPLL 107
             +LAP           +L  L+L+ ++ +   L+  L   L ++ P++  S     PLL
Sbjct: 61  AKVLAPGALAWAGMPGIDLSYLQLITFIGVIAALVQILEMFLDKYIPSLYDSLGIFLPLL 120

Query: 108 LGNAGILGVTLLNGQDDRGLGHAIALSLGAGLGFWLVLGLFDDLRQRTFNNDIPLPFRGL 167
             N  I    +     D     +   ++G+G G+ L + +   LR+R   + IP   +G+
Sbjct: 121 TVNCAIFAGVIFMANRDYNFAESAVFAMGSGTGWALAIVMLAGLRERMKFHAIPEGLQGI 180

Query: 168 PIQLISAGLMAVAFLGLRGL 187
            I  I+ GLMA+ F+   G+
Sbjct: 181 GITFITTGLMALGFMSFSGI 200