Pairwise Alignments

Query, 162 a.a., Electron transport complex protein RnfE from Pseudomonas fluorescens FW300-N2E2

Subject, 210 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 61.6 bits (148), Expect = 8e-15
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 24/164 (14%)

Query: 2   VGASDSLVGALGLWLAWALVLCSHGLAMGLVRQHLAACQRLLASIVLAATLSTCIGLVLQ 61
           +  +  L  AL + LA   V     L + ++R H+ +  R++  + + A+L   +  +LQ
Sbjct: 32  LAVTSKLETALVMALALTAVTAFSNLFISMIRNHIPSSVRIIVQMTIIASLVIVVDQLLQ 91

Query: 62  AWALELYRPLSLYVGWVALSCVALEHEGFFVDSRWPGRLRLAGL-----FGLLMISLGAV 116
           A+A ++ + LS++VG +  +C+ +     +     P    + G+     +G +++++G V
Sbjct: 92  AYAYQISKQLSVFVGLIITNCIVMGRAEAYAMKTPPMMSFMDGIGNGLGYGAILLAVGFV 151

Query: 117 RELIGNGL-------------------PLALLAPGGFILLGLLL 141
           REL GNG                     L LL P  F L+G+L+
Sbjct: 152 RELFGNGSLFGVQILHKISDGGWYQPNGLLLLPPSAFFLIGMLI 195