Pairwise Alignments

Query, 162 a.a., Electron transport complex protein RnfE from Pseudomonas fluorescens FW300-N2E2

Subject, 206 a.a., NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 60.5 bits (145), Expect = 2e-14
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 26/165 (15%)

Query: 2   VGASDSLVGALGLWLAWALVLCSHGLAMGLVRQHLAACQRLLASIVLAATLSTCIGLVLQ 61
           +  S+S+  A+ + LA   VL    L +  +R  +    R++A + + A+L   + +VLQ
Sbjct: 32  LAVSNSMQTAVVMTLAVTFVLVFSNLIISAIRNFIPNSVRIIAQMTVIASLVIIVDMVLQ 91

Query: 62  AWALELYRPLSLYVGWVALSCVALEHEGFFVDSRWPGRLRL------AGLFGLLMISLGA 115
             A EL + LS++VG +  +C+ +     F   ++P  L +      A  +GL++IS+  
Sbjct: 92  DVAYELSKQLSVFVGLIITNCIIMGRAEAFA-MKYPPHLAVVDAVGNAAGYGLVLISVAF 150

Query: 116 VRELIGNG-----------------LP--LALLAPGGFILLGLLL 141
           VREL+G G                 LP  +  L P  F L+GLL+
Sbjct: 151 VRELLGTGNLFGHSVLTTVENGGWYLPNEMFKLPPSAFFLIGLLI 195