Pairwise Alignments

Query, 417 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 450 a.a., OprD family porin from Pseudomonas sp. BP01

 Score =  253 bits (646), Expect = 8e-72
 Identities = 151/429 (35%), Positives = 220/429 (51%), Gaps = 53/429 (12%)

Query: 34  EDQSLTVLTRALYMNRDFKNNPSTS------------QSYREESGVAARAIYESGFTQGT 81
           +D  L +  +  + +RDF+N  S++              Y +E        ++SGFT G 
Sbjct: 28  DDAKLRLTNKNFFFHRDFRNGSSSATGTNAFKPVNERNGYAQEWAQGFILDFQSGFTPGA 87

Query: 82  VGVGVDGFAFGTVRIDGGSGRAGNGLFARDSDGNLEDTQSKVGGAVKFRLSDTVLKYGNQ 141
           VG+GVD  A   +++  G G AG  L   D DG   D  S+VG A+K R S + LKYG Q
Sbjct: 88  VGLGVDANAILGLKLSAGGGTAGLRLLPIDGDGKPGDEYSRVGAALKLRASKSTLKYGEQ 147

Query: 142 FTTSPVFSTDDSRLLPEVATGTLITSKEIKGLELSAGHFNAISSQTGM------------ 189
              +PV + +  RL P  ATG  +   E     L AGH+   + QTG+            
Sbjct: 148 MPMTPVLAVNTVRLFPSAATGLQLNVNEFDNFTLEAGHY---TKQTGVDSSNSDDKFTTD 204

Query: 190 -----GDDGLGLKSADIVGATYQFTDNFVAGVAASDVEDHYKKKYINLNYTLPINEDQSL 244
                G   +   SA  +G  YQ   N    + A  +ED + + Y N  YT  I+E Q +
Sbjct: 205 YALKRGGTAITYDSASFIGGRYQ-QGNLSLALYAGQLEDAWHQYYGNTKYTYAIDEGQRI 263

Query: 245 NFDFNGYDSQDQGQKLSGDVDNRIWSLAAAYAIGAHKFTLAHQRSSGDTGYVYGVDG--G 302
            FDFN Y + + G+ L+G ++N  WS + AY  G H  ++ HQR +GD    +   G  G
Sbjct: 264 AFDFNIYRTLNYGKSLAGPINNTSWSFSTAYTTGGHTLSVIHQRINGDEPLDWIGFGTMG 323

Query: 303 GTIFLANSIQYSDFNGQDERSWQARYDLNMKTYGVPGLSFMTRYVTGDNIETGGA----- 357
           GTI + N++QY+ F   +ERSWQ RYD +    G+PGLSFMTRYV GD ++   +     
Sbjct: 324 GTITIGNAVQYATFTEANERSWQLRYDYDFAALGIPGLSFMTRYVRGDGMDNSHSHNPYY 383

Query: 358 ----------EGKEHEWDFETKYVMQSGPAKDLSFRVRAAFYRANSDYNAINGNDNNDTR 407
                     + K  E +F+ KYV+QSGPA+D+SFR+R + +RA S Y  +   D ++ R
Sbjct: 384 TARYVYDSDKDNKHWERNFDIKYVIQSGPARDMSFRLRQSTHRATSGYRYL---DIDEVR 440

Query: 408 LIIEYPLSI 416
           LI E+P++I
Sbjct: 441 LITEFPINI 449