Pairwise Alignments

Query, 417 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

Subject, 448 a.a., outer membrane porin OprD family from Pseudomonas aeruginosa PA14

 Score =  263 bits (672), Expect = 8e-75
 Identities = 169/445 (37%), Positives = 240/445 (53%), Gaps = 39/445 (8%)

Query: 6   WSM-IALAVSASTSQFAMASSQEESKGFIEDQSLTVLTRALYMNRDFKNNPSTSQS--YR 62
           W++ + L      S  A  +++   +GFIE   + +L R  Y NRDF+   S+     Y 
Sbjct: 10  WTLPLLLGAGVMASAVAEENAERSKEGFIEGSEVNLLLRNFYFNRDFRKGQSSPAGGGYT 69

Query: 63  EESGVAARAIYESGFTQGTVGVGVDGFAFGTVRIDGGSGRAGNG----LFARDSDGNLED 118
           EE      A + SGFTQGT+GVG+D FA   VR+D G GR+G G    L   D  G  +D
Sbjct: 70  EEWVQGFMANFSSGFTQGTLGVGIDAFAQLGVRLDSGGGRSGAGGSVDLLPYDDQGRPQD 129

Query: 119 TQSKVGGAVKFRLSDTVLKYGNQFTTSPVFSTDDSRLLPEVATG-TLITSKEIKGLELSA 177
             S+ GGAVK R   TVL+ G+ F  +PV    +SRL P    G TL+     KGL L A
Sbjct: 130 DYSRAGGAVKLRWYGTVLRVGDVFPETPVIQYGNSRLFPSSFRGFTLVNDSLAKGLTLQA 189

Query: 178 GHFNAIS--SQTGMGDD------GLGLKSADIV--GATYQFTDNFVAGVAASDVEDHYKK 227
           G  N+++  + T   DD      G  + S  +   G  YQ T+++   +  S  +D + +
Sbjct: 190 GKLNSMTQPNSTSGSDDFYSFYTGRRIDSPWVAYAGGDYQATEHWSVSLYGSRQKDAWDQ 249

Query: 228 KYINLNYTLPINEDQSLNFDFNGYDSQDQGQKLSGDVDNRIWSLAAAYAIGAHKFTLAHQ 287
            Y   ++  P+++  SL    N Y  +DQG+++ G++DN IWS+   +A G H+  L++Q
Sbjct: 250 YYAGTSFNYPLDDKLSLLGGANYYKVKDQGRQVMGELDNDIWSVRGGFAYGPHQVLLSYQ 309

Query: 288 RSSGDTGYVYGVDGGGTIFLANSIQYSDFNGQDERSWQARYDLNMKTYGVPGLSFMTRYV 347
           R++GD  + Y +    +I+L NSIQYSDFN   ERS   RYDL+M  +GVPGLSFMTRY 
Sbjct: 310 RNNGDDDFDY-LRQTDSIYLDNSIQYSDFNSPKERSLMLRYDLDMAAFGVPGLSFMTRYG 368

Query: 348 TGDNIETGGAEG-------------KEHEW--DFETKYVMQSGPAKDLSFRVRAAFYRAN 392
            G + +   A                +  W  D E KYV+Q G AKDL+FRVR A  R++
Sbjct: 369 KGWDADYSNANSVYMRTDANGNPLTNQGRWERDVEVKYVVQGGAAKDLAFRVRQATVRSD 428

Query: 393 SDYNAINGNDNNDTRLIIEYPLSIL 417
           S       +D ++ RLI+EYPL IL
Sbjct: 429 S-----FESDLDEVRLIVEYPLQIL 448