Pairwise Alignments

Query, 280 a.a., Small-conductance mechanosensitive channel from Pseudomonas fluorescens FW300-N2E2

Subject, 277 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  144 bits (364), Expect = 2e-39
 Identities = 82/272 (30%), Positives = 143/272 (52%), Gaps = 3/272 (1%)

Query: 3   LNAEVDNLVKASQTWIPMIMEYGSRVLLAVITLAIGWWLINKVTQKLGALLALRNADLAL 62
           L  E+  L          +++Y  +++ A++   +G W+ NK++  +         D+ L
Sbjct: 6   LEQELAQLQNVYNLLTEFLVKYSFQLVGALLIFLLGLWVANKISNLVAKQFEKHEIDITL 65

Query: 63  QGFISTLANIILKILLIVSVASMIGVETTSFVAAIGAAGLAIGLALQGSLANFAGGVLIL 122
             F+S L  I++ +++ V     +G+  T  VAAIGAA L  GLALQG L+N+A GV I+
Sbjct: 66  SNFVSNLVRILIIVMVGVIALGKLGISITPMVAAIGAASLGAGLALQGMLSNYAAGVTII 125

Query: 123 LFRPFRIGDWIEAQGVAGTVDSIQIFHTVLRTGDNKTVIVPNGNLSNGIITNTNRQPTRK 182
           + RPF +G+ IE QGV+G V SI +  T+L   + + + +PN ++   I+ N+      +
Sbjct: 126 VTRPFVVGNTIEIQGVSGVVKSIHLGLTLLTNEEGEVISIPNKHIVGEILHNSFSDKLVE 185

Query: 183 VVFDVGVDYQADLQKAREVLLD-LAKDERVLADPAPEAVISTLGDSSITVSLRIWVKTAD 241
           + F+  + Y +D  +   +    L  +E V  + AP+  I+      + + LR WV T  
Sbjct: 186 IRFN--ISYASDANQVLAIAQQVLDANEEVNQERAPQIGINGFNSIGLEIGLRYWVPTNR 243

Query: 242 YWSVMFMLNEQARDRLKDAGIDIPFPQRVIRV 273
           Y+   + +N +  + L+ AGI+IP P R I +
Sbjct: 244 YYQNKYQVNLELINALRQAGIEIPCPVREIHI 275