Pairwise Alignments

Query, 280 a.a., Small-conductance mechanosensitive channel from Pseudomonas fluorescens FW300-N2E2

Subject, 274 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  223 bits (567), Expect = 5e-63
 Identities = 119/274 (43%), Positives = 171/274 (62%), Gaps = 1/274 (0%)

Query: 7   VDNLVKASQTWIPMIMEYGSRVLLAVITLAIGWWLINKVTQKLGALLALRNADLALQGFI 66
           ++NL K  +    +I+ YG +V+ A+I   IG +L N   +    L+  R  D  +  F+
Sbjct: 1   MENLDKYIEQAPELILTYGLQVVFAIIIFIIGKYLANVAKKLTTKLMNKRKIDKTVVSFV 60

Query: 67  STLANIILKILLIVSVASMIGVETTSFVAAIGAAGLAIGLALQGSLANFAGGVLILLFRP 126
           + +A  ++ +  +++    IGV+T S VA IGAAGLA+GLALQGSL+NFA GVL++LFRP
Sbjct: 61  ANMAWALVFVFTVIATLGQIGVQTASLVAVIGAAGLAVGLALQGSLSNFASGVLMVLFRP 120

Query: 127 FRIGDWIEAQGVAGTVDSIQIFHTVLRTGDNKTVIVPNGNLSNGIITNTNRQPTRKVVFD 186
            R+GD+IEA G+AGTVD I IF T LRT DNK ++ PN ++ NG ITN +   TR++   
Sbjct: 121 CRVGDYIEAAGIAGTVDEITIFSTKLRTPDNKVIVAPNSSIMNGTITNYSAMETRRIDLV 180

Query: 187 VGVDYQADLQKAREVLLD-LAKDERVLADPAPEAVISTLGDSSITVSLRIWVKTADYWSV 245
           +GV Y ADL++ +EVL   L  +  +L DPA    ++ L DSS+   +R WVK +DYW  
Sbjct: 181 IGVSYDADLKQTKEVLKQVLDNNAYILKDPAYTVALTELADSSVNFVVRPWVKGSDYWPA 240

Query: 246 MFMLNEQARDRLKDAGIDIPFPQRVIRVVQEGAA 279
            F + EQ +  L +  I IP+PQ  I V +  AA
Sbjct: 241 RFEILEQIKLALDENNIGIPYPQMDIYVKETPAA 274