Pairwise Alignments

Query, 280 a.a., Small-conductance mechanosensitive channel from Pseudomonas fluorescens FW300-N2E2

Subject, 540 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  150 bits (380), Expect = 5e-41
 Identities = 82/252 (32%), Positives = 138/252 (54%), Gaps = 3/252 (1%)

Query: 28  VLLAVITLA-IGWWLINKVTQKLGALLALRNADLALQGFISTLANIILKILLIVSVASMI 86
           V L ++ LA +    + ++ +K+ +   L+ + L    F+S     +  + L++++ S +
Sbjct: 289 VFLLILFLAHLAGKAVQRIVKKMVSNSKLKFSKLLQDFFVSLSGKTVFALGLMIAL-SQL 347

Query: 87  GVETTSFVAAIGAAGLAIGLALQGSLANFAGGVLILLFRPFRIGDWIEAQGVAGTVDSIQ 146
           G E    +A  G AG+ IG ALQ +L+NFA G++IL++RP+ +GD I A GV G V  + 
Sbjct: 348 GFELGPLLAGFGVAGVIIGFALQDTLSNFASGMMILIYRPYDVGDLINAAGVTGKVSQMS 407

Query: 147 IFHTVLRTGDNKTVIVPNGNLSNGIITNTNRQPTRKVVFDVGVDYQADLQKAREVLLDLA 206
           +  T ++T DN+ +I+PN  +    I N   +  R+V    G+ Y  +++KA +VL  + 
Sbjct: 408 LVSTTIKTLDNQRLIIPNNKIWGDTINNITVEHQRRVDMTFGIGYGDNIEKAEQVLRGIV 467

Query: 207 KDE-RVLADPAPEAVISTLGDSSITVSLRIWVKTADYWSVMFMLNEQARDRLKDAGIDIP 265
            +  +VL  P P   +  LG+SS+   +R WVK  DYW V + +    + R     I IP
Sbjct: 468 DEHPKVLKQPEPTVKLHLLGESSVDFVVRPWVKPEDYWDVYWDITRAVKMRFDQEDISIP 527

Query: 266 FPQRVIRVVQEG 277
           FPQR + + Q G
Sbjct: 528 FPQRDVHIYQTG 539