Pairwise Alignments

Query, 280 a.a., Small-conductance mechanosensitive channel from Pseudomonas fluorescens FW300-N2E2

Subject, 275 a.a., hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  218 bits (556), Expect = 9e-62
 Identities = 115/257 (44%), Positives = 163/257 (63%), Gaps = 1/257 (0%)

Query: 20  MIMEYGSRVLLAVITLAIGWWLINKVTQKLGALLALRNADLALQGFISTLANIILKILLI 79
           +IM YG ++L A++   +G +      + +  LL  R  D  +  F++ L+  ++ +  I
Sbjct: 14  LIMTYGLKILFALVIFFVGKYFAGVAQKVVHKLLNSRKVDPTVVSFVANLSWAVVFVFTI 73

Query: 80  VSVASMIGVETTSFVAAIGAAGLAIGLALQGSLANFAGGVLILLFRPFRIGDWIEAQGVA 139
           ++    IGV+T S VA IGAAGLA+GLALQGSL+NFA GVL++LFRP R+GD+IEA G+A
Sbjct: 74  IATLGQIGVQTASLVAVIGAAGLAVGLALQGSLSNFASGVLMVLFRPCRVGDYIEAAGIA 133

Query: 140 GTVDSIQIFHTVLRTGDNKTVIVPNGNLSNGIITNTNRQPTRKVVFDVGVDYQADLQKAR 199
           GTVD I IF T LRT DNK ++ PN ++ NG ITN +    R++   + V Y ADL + +
Sbjct: 134 GTVDEITIFSTKLRTPDNKVIVAPNSSIMNGTITNYSASENRRIDLVICVSYSADLAQTK 193

Query: 200 EVLLD-LAKDERVLADPAPEAVISTLGDSSITVSLRIWVKTADYWSVMFMLNEQARDRLK 258
           +VL + L  ++ VL +P     +S L  SSI   +R WVKTADYW+  F + EQ ++ L 
Sbjct: 194 KVLTEILDNNQYVLKEPGYTVGLSELASSSINFVVRPWVKTADYWTARFEILEQIKNALD 253

Query: 259 DAGIDIPFPQRVIRVVQ 275
            A I+IPFPQ  I V Q
Sbjct: 254 AADIEIPFPQMDIHVKQ 270