Pairwise Alignments

Query, 288 a.a., ABC spermidine/putrescine transporter, inner membrane subunit from Pseudomonas fluorescens FW300-N2E2

Subject, 322 a.a., binding-protein-dependent transport systems inner membrane component (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  137 bits (344), Expect = 4e-37
 Identities = 82/268 (30%), Positives = 140/268 (52%), Gaps = 6/268 (2%)

Query: 14  WLFLSPSMLFLGVLIAASLLVLRMSVGTKGAEWSGFSLASYEQLLEPYYLKSLLLTLRLA 73
           WL+L    LF  +     LLV  +  G        F+  +Y +L +P +++ L  +L LA
Sbjct: 16  WLWLG---LFALLPNLGLLLVTFLERGESDFVSLVFTWDNYARLADPVFIRILGESLWLA 72

Query: 74  LISAVIAVLLAIPVAYTMSRLASPLLRRVFLAAVLLPLLVNLLLQSYGWLVILGPAGMLN 133
             S ++ +L+  P AY ++  A   LR   L  V++P   N L+++Y  ++IL   G+ +
Sbjct: 73  AASTLVCLLIGYPFAYAVAT-ARRGLRPWLLLLVVIPFWTNSLIRTYALIIILKSQGIAS 131

Query: 134 QALMGLGLIKRPIMLLYNQNGVLMGLVQTAFPLAVLPIASAMRGVARSYEEAAATLGASR 193
             LM LGL+  P+  +Y +  V  GL  T  P  +LP+ +++  + +   +AA  LGAS 
Sbjct: 132 NVLMALGLVSEPVSFMYGEFAVFTGLTYTLLPFMILPLYASIEKLDKRLLDAAKDLGASS 191

Query: 194 FQVFRQVVLPMSLPGIITGATLVFAYNASSFVVPLLLGGRRVPMLAVMVHDQIAPLMNWP 253
            + F  V LP++LPGI+ G  LVF  +   F +P +LGG +  ++   + +Q     +WP
Sbjct: 192 LRAFWHVTLPLTLPGIVAGCMLVFLPSLGCFYIPEILGGAKSMLIGNFIKNQFLVARDWP 251

Query: 254 AASAAGVVLIVTTLMIMTLSEYFTGRRR 281
             +AA  +L  T L+++ +  Y+   RR
Sbjct: 252 LGAAASTIL--TVLLVLMIIGYWLSSRR 277