Pairwise Alignments

Query, 351 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

Subject, 344 a.a., GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  129 bits (323), Expect = 1e-34
 Identities = 76/198 (38%), Positives = 116/198 (58%), Gaps = 14/198 (7%)

Query: 159 LEQRNKSLEAIIEERTRELSRVNHQLQIQLDENRRLAETDALTRVANRYRLEQALPLACE 218
           LE+RN+ LE+II+ RT EL+  N++L+       +L+ TD LT + NR   +Q L     
Sbjct: 144 LEERNRELESIIQARTYELAEANNRLE-------KLSNTDGLTNIGNRRLFDQMLQKEWS 196

Query: 219 RAQRFREPLSLIAMDVDDFKDINDRYGHAFGDAALVQVVQSVKRC-QRDGDLLVRWGGDE 277
           R QR   PLSLI +D+D FK  ND YGH  GD  L  +   + +  +R G+L+ R+GG+E
Sbjct: 197 RGQRNNTPLSLIMLDIDHFKLFNDHYGHLAGDDCLKMLANGLSQSGRRAGELVARYGGEE 256

Query: 278 FIMILPNTTLADARLLAESIRRGLSDL----LPVGDFQITMSFGVVQRLENEQH--ATLL 331
           F+++LPNT L  A   A+ + + +  L    +      +T+S GV   L +++H    L+
Sbjct: 257 FVILLPNTDLQTALDTAKHVHQLIQSLAIPHIKTNLGIVTVSVGVACLLPSDKHNALELV 316

Query: 332 HRADQALYRSKMSGKNVI 349
           H+AD ALY +K +G+N I
Sbjct: 317 HQADTALYLAKSAGRNCI 334