Pairwise Alignments

Query, 351 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

Subject, 312 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  123 bits (309), Expect = 6e-33
 Identities = 92/303 (30%), Positives = 141/303 (46%), Gaps = 49/303 (16%)

Query: 58  YRNPGWYTMLGYLPHSLDNNVLTWESVIHPDDYPRVMALFD-DYLEQRSH-------GYQ 109
           + N  +   LGY    + N +  W   ++PD   R  A+ + D +   S        G++
Sbjct: 45  FMNHAFVEQLGYNLSEIPN-IAAWFDTVYPDPIIREQAMLEWDSVVYESEQQGLSTAGFK 103

Query: 110 AEYRCRTRDGTYIWIEDRGYVIARNPDGTVARMIGAHRSIDDKKRLFEQLEQRNKSLEAI 169
              RC T  G + W                  +I A            QL   N+S   I
Sbjct: 104 TFIRCGT--GQFRWF-----------------LINA------------QLTTENQSNLNI 132

Query: 170 IEERTRELSRVNHQLQIQLDENRRLAETDALTRVANRYRLEQALPLACERAQRFREPLSL 229
           +  R        HQLQ+ L+EN R ++TD LT +ANR ++E  L  A  ++ R +  L +
Sbjct: 133 VTMRDV------HQLQLLLEENERQSKTDLLTGLANRRQIEDVLAAAMAKSDRTQSSLCV 186

Query: 230 IAMDVDDFKDINDRYGHAFGDAALVQVVQSVKRCQRDGDLLVRWGGDEFIMILPNTTLAD 289
           +  D+D FK+IND +GH  GD  L  V   ++   +    + RWGG+EF+++L +     
Sbjct: 187 VMCDIDFFKNINDNFGHLCGDDVLKIVASQLQHSAQAATCIARWGGEEFLIVLEHVVPES 246

Query: 290 ARLLAESIRR--GLSDLLPVGD-FQITMSFGVVQRLENEQHATLLHRADQALYRSKMSGK 346
           A +L E +R     +D    G   Q+TMSFG VQ   NE   +LL R D+ALY++K  G+
Sbjct: 247 AGVLCEQLRGLIAATDYQSYGQHMQLTMSFGCVQYQANESLQSLLCRVDKALYQAKNGGR 306

Query: 347 NVI 349
           N +
Sbjct: 307 NQV 309