Pairwise Alignments

Query, 671 a.a., Excinuclease ABC subunit B from Pseudomonas fluorescens FW300-N2E2

Subject, 733 a.a., Excinuclease ABC, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  767 bits (1981), Expect = 0.0
 Identities = 394/670 (58%), Positives = 496/670 (74%), Gaps = 23/670 (3%)

Query: 2   SEFQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQIQRPTLV 61
           +EF+L + +QPAGDQP+AI  ++ G+ A    Q LLGVTGSGKTF++A VIA++ RPTL+
Sbjct: 36  AEFRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLI 95

Query: 62  LAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 121
           LAPNKTLAAQLYGEFK FFP+NAVEYFVSYYDYYQPEAYVP +DT+IEKD+SIN+ I++M
Sbjct: 96  LAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM 155

Query: 122 RLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYT 181
           R +AT+ALLER+D IIV +VSCIYG+GS E+Y +M++ +  G  L +  LL+ L +LQ+T
Sbjct: 156 RHAATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFT 215

Query: 182 RNDMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFT 241
           RND+ F R  FRVRGD ++I+PA  +  A R+ L+ DE+ES+  FDPLTGE+   L   T
Sbjct: 216 RNDIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEVT 275

Query: 242 FYPKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGY 301
            YP SH+VTPR  L  A+  IK EL+E L       K++EAQRLEQRT FDLEMI   G+
Sbjct: 276 VYPASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGH 335

Query: 302 CNGIENYSRYLSGRPAGAPPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLV 361
           C  IENYSR+L+GR  G PPPTL++YLP DALL +DESHV+VPQ+G M++GD +RK  L 
Sbjct: 336 CKSIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLA 395

Query: 362 EYGFRLPSALDNRPMRFDEWESVSPQTIFVSATPGNYEAEHAGRVV-EQVVRPTGLVDPQ 420
           E+GFRLPS +DNRP++F+EW+ + P +IFVSATPG +E E  G VV EQV+RPTGLVDP 
Sbjct: 396 EFGFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPV 455

Query: 421 VEVRPALTQVDDLLSEISKRVALEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDT 480
             +RP   QVDDLL E+    A  ERVLVTTLTKRM+EDLT+YL + GVRVRY+HSDI+T
Sbjct: 456 CIIRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIET 515

Query: 481 VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540
           +ER+EIIRDLRLG FDVLVGINLLREGLD+PE +LVAILDADKEGFLRS  SLIQTIGRA
Sbjct: 516 LERIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRA 575

Query: 541 ARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDVADIMEG--- 597
           ARN+ GR ILYAD++T S+  AI ET RRR +Q  +N A+GITP+ V   ++D++     
Sbjct: 576 ARNVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVLSSVYE 635

Query: 598 ---ATVPGSRSKKRKGMAKAAEESARYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAA 654
               TV    S   + + K+  E                 +  L+++M   A DLEFE A
Sbjct: 636 KDYVTVTTGVSGDNQLVGKSLRE----------------HLADLDKRMRAAAADLEFEEA 679

Query: 655 AQLRDEIGKL 664
            +LRDEI +L
Sbjct: 680 GRLRDEIRRL 689