Pairwise Alignments

Query, 270 a.a., Inner membrane protein from Pseudomonas fluorescens FW300-N2E2

Subject, 274 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  129 bits (324), Expect = 7e-35
 Identities = 78/248 (31%), Positives = 127/248 (51%), Gaps = 7/248 (2%)

Query: 9   RQRTLAKHPVPEETWQRVRHQLSFLDGISAAEDQWLREACVLFLHDKHLTALPGVELHQE 68
           R+  +AK   P      ++ ++ +   + +     L+    +F+ +K      G+E+  E
Sbjct: 28  RRAQIAKRAFPASWRAILKRRMPYFRALPSDLQLQLKRHIQIFIAEKQFVGCQGIEIDDE 87

Query: 69  QRLLLAAQAQLPLMHLGDLNWYQGFHEIVLYPDDFLSPQRYRDASGIEHEWDGEHSGEAW 128
            R+ +AAQA L L++  D ++Y    +I++YP  F+  Q  ++  G   E     SGE+W
Sbjct: 88  IRVTIAAQACLLLLNR-DTDYYPKLKQILVYPSLFIVNQTQQNGDGTFWERKNILSGESW 146

Query: 129 PQGPIILAWDGVM--ASGGWDGYNLVIHELAHKLDMLNGDANGLPPLHAGMRVSDWADAM 186
             G ++L+W      A+  +DG+N+VIHE AH+LD  +G +NG P L        W+  M
Sbjct: 147 EFGKVVLSWHTTKEDAAQPYDGHNVVIHEFAHQLDQEDGHSNGAPILAHANDYQSWSTVM 206

Query: 187 QQAFDDLDRQLDQHPNTQP-LIDPYAAENPAEFFAVTSEYFFSAPDLLHQAYPKVYEQLK 245
            Q F  L      H   QP L + Y A N AEFFAV +E FF  P   +Q +  +Y+Q+ 
Sbjct: 207 AQEFTRLREDAKWH---QPSLFNYYGATNEAEFFAVITETFFERPHEFYQQHQALYQQMS 263

Query: 246 AFYRQDPL 253
            F++ DP+
Sbjct: 264 HFFKLDPV 271