Pairwise Alignments

Query, 175 a.a., TRAP-type C4-dicarboxylate transport system, small permease component from Pseudomonas fluorescens FW300-N2E2

Subject, 188 a.a., TRAP transporter, DctQ family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 66.6 bits (161), Expect = 2e-16
 Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 5/129 (3%)

Query: 23  SVLAVALMIPWGVFARYVLGSGSSWPEPTAILLMIVFTFIGAAASYRSGSHMAVDMVTSR 82
           ++  +A+++   VF+RY L     W E    +L++  TFIG A + R+G+H  +D +   
Sbjct: 29  AMAGMAVLVAVQVFSRYALNESLFWSEELGRILLVQLTFIGCAVAVRAGAHPGMDALVRH 88

Query: 83  LPSHWRTVASVFTQLLMAAVCIF-MTVW-GAKLCMTTWNQFMSAIPTLRVGITYMPIPIG 140
           LP   R V  +   +L+AA+  F +  W GA+      +Q   A+   R+ I  +P+P+G
Sbjct: 89  LPRRGRHVTHML--VLLAALAFFALLAWHGARFAWFVRHQSTPALGLSRL-IPALPLPVG 145

Query: 141 GFLTLIFVL 149
           G L+++ VL
Sbjct: 146 GALSMLHVL 154