Pairwise Alignments

Query, 652 a.a., DNA primase (EC 2.7.7.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 647 a.a., DNA primase, catalytic core from Pseudomonas stutzeri RCH2

 Score = 1039 bits (2687), Expect = 0.0
 Identities = 515/657 (78%), Positives = 574/657 (87%), Gaps = 15/657 (2%)

Query: 1   MAGLIPQSFIDDLLNRTDIVDVVSSRLQMKKAGKNYTACCPFHKEKTPSFSVSPDKQFYY 60
           MAGLIPQSFIDDLLNR+DIV+VV SR+Q+KKAGKNY+A CPFHKEKTPSFSVSPDKQFYY
Sbjct: 1   MAGLIPQSFIDDLLNRSDIVEVVGSRIQLKKAGKNYSALCPFHKEKTPSFSVSPDKQFYY 60

Query: 61  CFGCGAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRQHKPRQPTDSPLYPLL 120
           CFGCGAGGNALGF+MDHD LDFPQAVEELAK AGME+P E+SGR+HKPRQP DSPLYPLL
Sbjct: 61  CFGCGAGGNALGFVMDHDQLDFPQAVEELAKRAGMEVPHEDSGRKHKPRQPVDSPLYPLL 120

Query: 121 TAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQQ 180
            AAAD+YRQALKSHP RK+AV+YLKGRGL+G IARDFGLGFAPPGWDNL KHL  D LQQ
Sbjct: 121 AAAADYYRQALKSHPTRKSAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQQ 180

Query: 181 RAMIDAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGDDKPKYLNSPETPV 240
           +A+IDAGLLIENAE GKRYDRFRDRVMFPIRD+RGR+IAFGGRVLGDDKPKYLNSPETPV
Sbjct: 181 KALIDAGLLIENAENGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGDDKPKYLNSPETPV 240

Query: 241 FHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHMKRLF 300
           FHKGQELYGLYEAR+ NR+LDEI+VVEGYMDVIALAQQGLRNAVATLGTATSEEH+KRLF
Sbjct: 241 FHKGQELYGLYEARQTNRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLF 300

Query: 301 RVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDPDTLVRSEGTDAF 360
           R+VP+VLFCFDGD AGR AAWRALEATLP LQDGRRARFLFLP+GEDPDTLVR+EGTDAF
Sbjct: 301 RIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDPDTLVRAEGTDAF 360

Query: 361 RARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGANLRTLMRQRLSE 420
           RARI QH+QPLADYFFQQL++EADPRSLEGKAH+ATLAAPLI+K+PG+NLRTLMRQRL+E
Sbjct: 361 RARIQQHSQPLADYFFQQLSDEADPRSLEGKAHLATLAAPLIEKIPGSNLRTLMRQRLAE 420

Query: 421 ITGLNSEAVNQLVHS---APQEAPPAYDPGIDYDAMPDFA--DYHQPQQDYAPQQEWTPK 475
           ITGLN EA+  +  +   +P  + P YD    Y+    +A  DY +P +        TPK
Sbjct: 421 ITGLNGEALQHMAAAPAPSPGNSTPEYDDSAYYETGAHYAETDYFEPPE--------TPK 472

Query: 476 KTGSGGKKWDKKPWDKNGKRGDRDQPRAPRVPAAVEPPTLAALRTLLHHPQLAEKVEDAG 535
           +  SG K+W KK W K+G+R D  +PR PR PA VEPPTL  LRTLLHHP+LA+KVED  
Sbjct: 473 QQRSGKKEW-KKDWKKSGQRPD-FKPRGPRTPATVEPPTLTTLRTLLHHPELAQKVEDVS 530

Query: 536 HFAAEDHSNTQLLVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAEKEWLIEGDNLE 595
           HFAAED +  QLLVALL A+QKNPKL S QLIARWHGT+QGRLL+ALAEKEWLI  DNLE
Sbjct: 531 HFAAEDDTYAQLLVALLGALQKNPKLRSLQLIARWHGTDQGRLLRALAEKEWLISADNLE 590

Query: 596 QQFFDTITSLSARQRERNLEQLLRKARQSELTSEEKNQLRDLLSRNVCASNPTSTGA 652
           QQFFDTI SL+ARQRER LE LLRKARQ EL++EEK+QLR+LLSRN   + PTSTGA
Sbjct: 591 QQFFDTINSLAARQRERRLENLLRKARQGELSAEEKDQLRNLLSRNAIPTTPTSTGA 647