Pairwise Alignments

Query, 652 a.a., DNA primase (EC 2.7.7.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

 Score =  449 bits (1156), Expect = e-130
 Identities = 226/436 (51%), Positives = 307/436 (70%), Gaps = 12/436 (2%)

Query: 1   MAGLIPQSFIDDLLNRTDIVDVVSSRLQMKKAGKNYTACCPFHKEKTPSFSVSPDKQFYY 60
           MAG IP+SFIDDLL R DIVDV+ +R+++KK GKNY+ACCPFH EKTPSFSVS +KQFY+
Sbjct: 1   MAGHIPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYH 60

Query: 61  CFGCGAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRQHKPRQPTDS------ 114
           CFGCGA GNA+ F+M+++ ++FP+A+EELA   G+E+ REE        + T +      
Sbjct: 61  CFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSEDK 120

Query: 115 -PLYPLLTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHL 173
             LY L+ + A FYRQ LK  PA K A++YLK RGL+GEI + FG+G+    WD + ++ 
Sbjct: 121 RSLYDLMGSIAQFYRQQLKV-PANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 179

Query: 174 SSDTLQQRAMIDAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGDDKPKYL 233
                 +  ++ AG+LIEN + G+RYDRFR RVMFPIRD RGR+I FGGR+     PKYL
Sbjct: 180 GQQRSSEDMLVTAGMLIEN-DNGRRYDRFRGRVMFPIRDRRGRVIGFGGRITEQGTPKYL 238

Query: 234 NSPETPVFHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSE 293
           NSPETP+FHKG+ELYGLYE  +  R   +I+VVEGYMDV+ALAQ G+  +VA+LGT+T+ 
Sbjct: 239 NSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTG 298

Query: 294 EHMKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDPDTLVR 353
           +H++ LFR   +V+ C+DGD+AGR+AAWRALE  L  L+ G   +FLFLP+GEDPD+ VR
Sbjct: 299 DHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDSYVR 358

Query: 354 SEGTDAFRARINQHAQPLADYFFQQLTE--EADPRSLEGKAHMATLAAPLIDKVPGANLR 411
             G   F  ++  +A PL+ Y F+ L E  + +  S EGK+ +  +A PLIDK+P   L+
Sbjct: 359 KYGKADFEQQV-ANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFLQ 417

Query: 412 TLMRQRLSEITGLNSE 427
            ++ + L E TG + +
Sbjct: 418 EILEKLLDERTGFDHQ 433



 Score = 60.5 bits (145), Expect = 2e-13
 Identities = 40/151 (26%), Positives = 69/151 (45%)

Query: 494 KRGDRDQPRAPRVPAAVEPPTLAALRTLLHHPQLAEKVEDAGHFAAEDHSNTQLLVALLE 553
           K+  + + R     A    P    +  L+ +P  AE V D                 +LE
Sbjct: 437 KKARKTENRPAPHKAIKRTPMRDVIALLIQNPSYAELVPDLASVRHLMIPGLDTFSEVLE 496

Query: 554 AVQKNPKLNSFQLIARWHGTEQGRLLKALAEKEWLIEGDNLEQQFFDTITSLSARQRERN 613
             ++ P + + QL+  W  ++   LL  LA  E  +  DN E+ F D++  + A+  E+ 
Sbjct: 497 KCRQYPHITTGQLLEHWRDSKNETLLSRLASWEIPLVEDNQEELFLDSLDKILAQCVEKQ 556

Query: 614 LEQLLRKARQSELTSEEKNQLRDLLSRNVCA 644
           +E L  K R   L++EEK +L+DL+ + + A
Sbjct: 557 IENLQAKERSVGLSTEEKRELQDLILKGLKA 587