Pairwise Alignments

Query, 652 a.a., DNA primase (EC 2.7.7.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 601 a.a., DNA primase (RefSeq) from Shewanella loihica PV-4

 Score =  429 bits (1103), Expect = e-124
 Identities = 254/643 (39%), Positives = 366/643 (56%), Gaps = 84/643 (13%)

Query: 5   IPQSFIDDLLNRTDIVDVVSSRLQMKKAGKNYTACCPFHKEKTPSFSVSPDKQFYYCFGC 64
           IP+ FI++L+ RTDIVD++ +++ +KKAGKN++ACCPFH EK+PSF+VS DKQFY+CFGC
Sbjct: 29  IPREFINELVARTDIVDLIDAKVPLKKAGKNHSACCPFHSEKSPSFTVSRDKQFYHCFGC 88

Query: 65  GAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRQHKPRQPTDSPLYPLLTAAA 124
           GA GNA+ F+M++D LDF  A+EELA   G+E+PRE+ G   +  +     LY L+  A+
Sbjct: 89  GAHGNAIDFVMEYDRLDFVDAIEELAGRLGLEVPREQ-GTGKRRDEGLSRDLYQLMEEAS 147

Query: 125 DFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQQRAMI 184
            +++  LK H  ++  +DYL  RGL+ E+   F +GFAP GWD L      +   Q  ++
Sbjct: 148 RYFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYRQNQDAQDKLL 207

Query: 185 DAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGDDKPKYLNSPETPVFHKG 244
            AG++IEN ++GKRYDRFRDR+MFPIRD RGR+I FGGRVLGD  PKYLNSPETP+FHKG
Sbjct: 208 TAGMVIEN-DSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPETPIFHKG 266

Query: 245 QELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHMKRLFRVVP 304
            ELYGLYE ++ +R+  +I++VEGYMDV+AL Q G+  AVA+LGT+T+ +  + L R   
Sbjct: 267 YELYGLYELKQRHRDPSQILIVEGYMDVVALTQFGVDYAVASLGTSTTADQFQLLLRSAK 326

Query: 305 NVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDPDTLVRSEGTDAFRARI 364
            V+ C+DGD+AG  AAWRALE  LP L+ G + +F+FLP+GEDPD+LVR  G  AF   I
Sbjct: 327 EVICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGEDPDSLVRQIGKPAFEQLI 386

Query: 365 NQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGANLRTLMRQRLSEITGL 424
            + A+ L ++ F  L      R    K  +A  A  LI+KV    L++L+ + L+   G+
Sbjct: 387 AE-AKLLPEFLFDTLAS----RYGTDKGTLAKQAMSLIEKVQDTVLQSLLLENLAYKLGM 441

Query: 425 NSEAVNQLVHSAPQEAPPAYDPGIDYDAMPDFADYHQPQQDYAPQQEWTPKKTGSG---- 480
           NS    Q      +                   D ++P Q+ A +   TP +        
Sbjct: 442 NSAEELQRKLGFKR------------------IDANKPLQNKALKGRGTPLRLAIALLVQ 483

Query: 481 ----GKKWDKKPWDKNGKRGDRDQPRAPRVPAAVEPPTLAALRTLLHHPQLAEKVEDAGH 536
               G     +P  K+ K    D                  L +LL     AEKV  A  
Sbjct: 484 HPHLGNNLPVQPALKHIKMAGID------------------LLSLLLDRTRAEKVNSA-- 523

Query: 537 FAAEDHSNTQLLVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAEKEWLIEGDNLEQ 596
                         LLE  + + +L++ + +A+W               E  +  +NL+Q
Sbjct: 524 -------------QLLEQFRGDDQLDTLKKLAQW---------------EHQVADENLQQ 555

Query: 597 QFFDTITSLSARQRERNLEQLLRKARQSELTSEEKNQLRDLLS 639
           +F   +  L+ +  E+  ++L  K      T EE+ QL+ L++
Sbjct: 556 EFKKALIWLNNQYIEQRYQELSLKQHH---TKEERMQLKKLIA 595