Pairwise Alignments

Query, 652 a.a., DNA primase (EC 2.7.7.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 575 a.a., protein containing DNA primase, DnaG/TOPRIM from Marinobacter adhaerens HP15

 Score =  398 bits (1022), Expect = e-115
 Identities = 254/657 (38%), Positives = 356/657 (54%), Gaps = 104/657 (15%)

Query: 1   MAGLIPQSFIDDLLNRTDIVDVVSSRLQMKKAGKNYTACCPFHKEKTPSFSVSPDKQFYY 60
           M+GLIPQ F+++LL+R D+ +++ SR+ +KKAG NY ACCPFH EKTPSF+V PDK FY+
Sbjct: 1   MSGLIPQQFVENLLDRIDLAELIGSRITLKKAGANYKACCPFHDEKTPSFNVRPDKGFYH 60

Query: 61  CFGCGAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRQHKPRQPTDSPLYPLL 120
           CFGCGA G+A+ F+ + + L F +AVEELAK  G+E+P + + +Q   +  T   L   L
Sbjct: 61  CFGCGAHGDAISFVREFEGLGFTEAVEELAKRVGLEVPYDRAAKQEIQQART---LTDAL 117

Query: 121 TAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQQ 180
             A+ FY+ ALK      A  DYL+ RGL   I   + +G+AP     L+   S D   Q
Sbjct: 118 DFASRFYQSALKGQQGAYAR-DYLQQRGLDNAIIEQYQVGYAPSTGTALFDVASKDL--Q 174

Query: 181 RAMIDAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGDDKPKYLNSPETPV 240
             +I+ G + +  + GK  D FR+RVMFPIR++RGR +AFGGR LGDDK KY+NSPE+ V
Sbjct: 175 GPLIETGTVSD--KYGKPRDLFRNRVMFPIRNSRGRTVAFGGRTLGDDKAKYINSPESDV 232

Query: 241 FHKGQELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHMKRLF 300
           FHK +E+YGL+EA++  R LD+++VVEGYMDVIALAQ G+  AVATLGTAT+++ +  L 
Sbjct: 233 FHKSREIYGLFEAKQAIRQLDKLLVVEGYMDVIALAQHGIHYAVATLGTATNQDSLTALL 292

Query: 301 RVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDPDTLVRSEGTDAF 360
           + V +++FCFDGDQAG  AA RA+E  L  + DG   +FL LP+GEDPDTLVR EG +AF
Sbjct: 293 KQVRHIVFCFDGDQAGFRAADRAMENALELMADGLHLQFLMLPQGEDPDTLVRKEGPEAF 352

Query: 361 RARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGANLRTLMRQRLSE 420
           + RI + A PL+ Y F + +E  D +  E +  +     PL++K+P + LR         
Sbjct: 353 QKRI-EGATPLSRYLFDRQSEGLDLQLPEHRGELRARVEPLLNKMPRSTLR--------- 402

Query: 421 ITGLNSEAVNQLVHSAPQEAPPAYDPGIDYDAMPDFADYHQPQQDYAPQQEWTPKKTGSG 480
                                         DAM     +H+  +    + +W  ++ G  
Sbjct: 403 ------------------------------DAM-----WHEMLRLCGGRNQWQSRQQGQK 427

Query: 481 GKKWDKKPWDKNGKRGDRDQPRAPRVPAAVEPPTLAALRTLLHHPQLAEKVEDAGHFAAE 540
           G +W       NG+R  RD+    R+   +   ++  L  LL  P LA +V         
Sbjct: 428 G-RW-------NGER--RDRVSEDRIDVKLSKDSILCL-ALLEAPDLATEV--------- 467

Query: 541 DHSNTQLLVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAEKEWLIEGDNLE-QQFF 599
                       E  + + + N  +  A W      R  K L     L  G        F
Sbjct: 468 -----------TELARSSRQFNQARNFAEWILANDIRDRKTLVRTLALDTGARERFYHLF 516

Query: 600 DTITSLSARQ-----------------RERNLEQLLRKARQSELTSEEKNQLRDLLS 639
           D I  + AR+                 R++ L  LLR    S LTSEE+ +LR L S
Sbjct: 517 DGIEHIPARESTLAAARELLSPNEEASRQQRLATLLRNL--SNLTSEERQELRALSS 571